Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k04r
         (708 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    36   0.14 
AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens ...    31   5.3  
AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens ...    31   5.3  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    30   9.3  

>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 228 HEHSHIATIIKD--FRDLFTNV*PLTSSSTHNNTIW*TKATQQVNSGIHTHTYVMKHTSI 401
           H ++H +T      F   +    PLT + TH +T   T +   +++ +H+HT+ + HTS 
Sbjct: 138 HTYTHTSTHTHPLTFTHTYPITHPLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTHTST 197

Query: 402 H 404
           H
Sbjct: 198 H 198



 Score = 34.3 bits (75), Expect = 0.43
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 228 HEHSHIATIIKDFRDLFTNV*PLTSSSTHNNTIW*TKATQQVNSGIHTHTYVMKHTSIHF 407
           H+H++  T        FT+  P+T   TH  T   T A    ++ IHTH +   H   H 
Sbjct: 136 HKHTYTHTSTHTHPLTFTHTYPITHPLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTHT 195

Query: 408 SRTT 419
           S  T
Sbjct: 196 STHT 199



 Score = 30.3 bits (65), Expect = 7.1
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +3

Query: 228 HEHSHIATIIKDFRDLFTNV*PLTSSS-THNNTIW*TKATQQVNSGIHTHTYVMKHTSIH 404
           H H+H  T I       T+  PLT +  TH + +    +    ++ +H+HT++  HT  H
Sbjct: 51  HIHTHPHTHIS------THTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIHSHTHSH 104

Query: 405 FSRTTGLICSNSKPLHSQFNIITYNDHDNNLQERH 509
               T          H Q + +T+  H +    +H
Sbjct: 105 IHSNTPTHTHPLTSTHIQTSTVTHT-HSHTHAHKH 138


>AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38312 fis, clone FCBBF3021506. ).
          Length = 134

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 394 VCFITYVCVCMPEFTCCVALVY-QIVLLCV 308
           +C   Y+CVC+P   C    VY +I ++CV
Sbjct: 15  LCVCIYMCVCVPVCMCVYVCVYVRICVICV 44



 Score = 30.3 bits (65), Expect = 7.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 391 CFITYVCVCMPEFTCCVALVYQIVLLCV 308
           C   YVC+C+  + C    V   V LCV
Sbjct: 57  CVFVYVCICVCLYVCVFVCVCMYVYLCV 84


>AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32873 fis, clone TESTI2003998, weakly similar to
           T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 170

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +3

Query: 366 HTHTYVMKHTSIHFSRTTGLICSNSKPLHSQFNIITYNDHDNNLQERHI*TTHNNL*FTR 545
           HTHT+ + H  +H    T    +  K  H+  N   +     +   RH  T  +    TR
Sbjct: 102 HTHTHAVTHVHMHAGTQTRTYTTLHKHAHTDTNTCAHTCTCTHTTHRHAHTRAHRHAHTR 161

Query: 546 SQLNT 560
           +Q +T
Sbjct: 162 TQRHT 166


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 225 LHEHSHIATIIKDFRDLFTNV*PLTSSSTHNNTIW*TKATQQVNSGIHTHTYVMKHTSIH 404
           +H ++H+ T +  +     +      S  H NT         +++  HTHTY   H  IH
Sbjct: 259 IHTYTHMHTHMDTYPHTHIHTCTHMHSHAHINTHTHAHIHMHMHTHTHTHTYTHAHAHIH 318

Query: 405 FS 410
            +
Sbjct: 319 IN 320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,180,385
Number of Sequences: 237096
Number of extensions: 1800759
Number of successful extensions: 3027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2877
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)