Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k04r
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF098986-6|AAC67427.1|  484|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +3

Query: 342 TQQVNSGIHTHTYVMKHTSIHFSRTTGLICSNSKPLHSQFNIITYNDHDNNLQERH 509
           T   N+ +   T + K  + H ++ T    +N++ LH ++NII     DNN +E+H
Sbjct: 380 TTTKNNNVEAITEIQKDQAEH-AKDTNNNNNNNEHLHDEYNII--QTEDNNEEEKH 432


>Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical
           protein K09C8.7 protein.
          Length = 97

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 510 CDAPEGYCHGRCM 472
           C  PEGYC G+CM
Sbjct: 68  CMDPEGYCPGKCM 80


>AF098986-6|AAC67427.1|  484|Caenorhabditis elegans Hypothetical
           protein C36C9.5 protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +3

Query: 297 TSSSTHNNTIW*TKATQQVNSGI-----HTHTYVMKHTSIHFSRTTGLICSNSKPLHS 455
           T S  HN+     +A   +NSG+     + HTY M H+SI  S  + L   +S P H+
Sbjct: 303 TYSMLHNSMPGAQRAYFNLNSGLPCPEHNAHTYNMLHSSIPGSYRSHLNLISSLPQHN 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,388
Number of Sequences: 27780
Number of extensions: 278593
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)