Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k04r
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.93 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.93 
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   5.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   5.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 502  SVTYELHTTTFSSPGANLIQFMTLTLNDLSKVTRLGMAT 618
            S  Y+L   T +  G+N  +F  +TL    ++++ G+A+
Sbjct: 1565 SSVYQLKVETHNVAGSNQAEFTFVTLTKEGELSKRGIAS 1603


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 502  SVTYELHTTTFSSPGANLIQFMTLTLNDLSKVTRLGMAT 618
            S  Y+L   T +  G+N  +F  +TL    ++++ G+A+
Sbjct: 1561 SSVYQLKVETHNVAGSNQAEFTFVTLTKEGELSKRGIAS 1599


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 NSGIHTHTYVMKHTSIHFSR 413
           ++ + + T+  +HTS H+SR
Sbjct: 214 SNSLRSRTHGFQHTSSHYSR 233


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 NSGIHTHTYVMKHTSIHFSR 413
           ++ + + T+  +HTS H+SR
Sbjct: 214 SNSLRSRTHGFQHTSSHYSR 233


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 NSGIHTHTYVMKHTSIHFSR 413
           ++ + + T+  +HTS H+SR
Sbjct: 214 SNSLRSRTHGFQHTSSHYSR 233


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 NSGIHTHTYVMKHTSIHFSR 413
           ++ + + T+  +HTS H+SR
Sbjct: 214 SNSLRSRTHGFQHTSSHYSR 233


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 NSGIHTHTYVMKHTSIHFSR 413
           ++ + + T+  +HTS H+SR
Sbjct: 203 SNSLRSRTHGFQHTSSHYSR 222


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 NSGIHTHTYVMKHTSIHFSR 413
           ++ + + T+  +HTS H+SR
Sbjct: 214 SNSLRSRTHGFQHTSSHYSR 233


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 210 IYS*PLHEHSHIAT 251
           I++ P H HSH AT
Sbjct: 426 IHATPHHHHSHAAT 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,330
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)