Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k04f
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 29 0.41
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 1.6
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 27 2.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 3.8
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 5.0
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 25 6.6
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 8.8
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 8.8
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb... 25 8.8
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 132 PSPSCTGRS*TPPISLGPVAERNTVQLLCSCPPCSHAE 19
P P RS TP + P+ +T+QL+ SCPP ++++
Sbjct: 33 PLPLTLSRS-TP---INPIIRSDTIQLVISCPPVTYSD 66
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 445 AAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQP--TSTITNKPALASSSSS 615
AAV ++ +HA + HSA S + Y +P + ST N PAL S S
Sbjct: 587 AAVDVMVAASIVHHAKTSLMHSAASSTPSYNGERIVPDVPSPCISTNPNLPALVGSLDS 645
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 1.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 228 LAVFYQTLDTKVPKW 272
+ V+Y+ LDTK+P+W
Sbjct: 834 IIVYYEKLDTKIPQW 848
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 502 DHSARSKSVMYQSMTSIPALQPTSTITNKPALASSSS 612
D SAR V+ T+IP + +S+I N P A SS
Sbjct: 178 DQSARQHQVLV-GQTAIPTSEASSSINNTPLQAPVSS 213
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = +1
Query: 358 SITRSTIRDLCSNGPGLLTNF*INTVRKAAAVVKLMVPKTAYHALPAADHSARSKSVMYQ 537
S T ST ++ P +++ ++ ++ ++ P T+ + ++ + S S++
Sbjct: 597 SSTSSTFSSASTSSPSSISS----SISSSSTILSSPTPSTSSLMISSSSIISGSSSILSS 652
Query: 538 SMTSIPALQPTST-----ITNKPALASSSSS 615
S+++IP ST I + L SSSSS
Sbjct: 653 SISTIPISSSLSTYSSSVIPSSSTLVSSSSS 683
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 487 ALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPALASSSSS 615
+L + ++S S S ++ PAL P ++NKP L S SS
Sbjct: 68 SLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNKPPLTWSPSS 110
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 207 VGFFAALLAVFYQTLDTKVPKWQLDSSIIG 296
VGFF ++L ++ D V ++ +IIG
Sbjct: 293 VGFFVSVLDALFECFDVPVVQYMYQENIIG 322
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +3
Query: 510 GEKQVC-DVPVDDFNPCTPA---NQYNYEQAGPCVFL 608
G K VC DV ++D + C N Y Y + PCV +
Sbjct: 195 GTKLVCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIM 231
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 485 WYAVFGTMSFTTAAAFLTVLIQKFVNNP 402
W+ G + AA F +L+QK + NP
Sbjct: 1413 WFESLGALDEDHAAQFTILLLQKNLKNP 1440
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -2
Query: 133 PVSELYRKILNAS-HFPRSGGGA 68
PV++L R A+ H P+SGGGA
Sbjct: 516 PVTQLRRAFEQATAHVPQSGGGA 538
>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 316
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 578 IVLVGWSAGIEVIDWYITDLLLAEWSAAGRA 486
IVL+G S G + + +Y+T +L + AG A
Sbjct: 112 IVLMGHSTGSQNVLYYLTQSILPNYLIAGIA 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,223
Number of Sequences: 5004
Number of extensions: 55693
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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