Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k03r
         (400 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456979-1|CAG33260.1|   68|Homo sapiens SEC61G protein.              100   4e-21
BC051840-1|AAH51840.1|   68|Homo sapiens Sec61 gamma subunit pro...   100   4e-21
BC009480-1|AAH09480.1|   68|Homo sapiens Sec61 gamma subunit pro...   100   4e-21

>CR456979-1|CAG33260.1|   68|Homo sapiens SEC61G protein.
          Length = 68

 Score = 99.5 bits (237), Expect = 4e-21
 Identities = 48/67 (71%), Positives = 53/67 (79%)
 Frame = -3

Query: 308 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXFVKLIHIP 129
           MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA           FVKLIHIP
Sbjct: 1   MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 128 INNIIVG 108
           INNIIVG
Sbjct: 61  INNIIVG 67


>BC051840-1|AAH51840.1|   68|Homo sapiens Sec61 gamma subunit
           protein.
          Length = 68

 Score = 99.5 bits (237), Expect = 4e-21
 Identities = 48/67 (71%), Positives = 53/67 (79%)
 Frame = -3

Query: 308 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXFVKLIHIP 129
           MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA           FVKLIHIP
Sbjct: 1   MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 128 INNIIVG 108
           INNIIVG
Sbjct: 61  INNIIVG 67


>BC009480-1|AAH09480.1|   68|Homo sapiens Sec61 gamma subunit
           protein.
          Length = 68

 Score = 99.5 bits (237), Expect = 4e-21
 Identities = 48/67 (71%), Positives = 53/67 (79%)
 Frame = -3

Query: 308 MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXFVKLIHIP 129
           MDQ+ +FVEP +QF KDSIRLV+RCTKPDRKEFQKIA+ATA           FVKLIHIP
Sbjct: 1   MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 128 INNIIVG 108
           INNIIVG
Sbjct: 61  INNIIVG 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,606,049
Number of Sequences: 237096
Number of extensions: 929687
Number of successful extensions: 1366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)