Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k03f
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0585 + 4332352-4332445,4332552-4332667                           80   9e-16
06_03_0967 - 26395537-26396590,26400918-26401111                       49   1e-06
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561...    30   0.74 
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   1.3  
06_01_0763 + 5712466-5712721,5714302-5715743                           28   3.0  
11_01_0768 - 6442332-6443792                                           28   3.9  

>02_01_0585 + 4332352-4332445,4332552-4332667
          Length = 69

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 39/68 (57%), Positives = 46/68 (67%)
 Frame = +3

Query: 93  MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 272
           MD +   V+P ++FAKDS+RLV+RC KPDRKEF K+A  TA            VKLI IP
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 273 INNIIVGS 296
           INNIIVGS
Sbjct: 61  INNIIVGS 68


>06_03_0967 - 26395537-26396590,26400918-26401111
          Length = 415

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +3

Query: 93  MDQIAKFVEPGKQFAKDSIRLVRRCTKPDRKEFQKIA 203
           MD I   V+P ++FAKDS+RLV+RC KPDRK  +++A
Sbjct: 1   MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKGRERLA 37


>08_01_0649 +
           5607234-5608397,5609358-5609513,5609598-5609796,
           5612419-5613608,5614505-5614660,5614742-5615041
          Length = 1054

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 293 ADNYVINGDMNQLYKESNEAHDAKSDGCCN--GNLLEFFPIRFC--ASSH*SDGVLSELL 126
           AD Y  NGD    Y+ +   HD+ + G  N  GNL   FP++    AS+H  + +L  LL
Sbjct: 338 ADEYSSNGDPGDEYRGNYVNHDSANYGRANKFGNL--NFPVKSIVDASAHEGELLLRRLL 395

Query: 125 ARLDEFCDL 99
                F +L
Sbjct: 396 ENFPMFNNL 404


>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -3

Query: 209 CNGNLLEFFPIRFCASSH*----SDGVLSELLARLDEFCDLIHY*INNSTI 69
           C  +L   F ++F  ++H      DGV + LL  LDEF  LIH    NS I
Sbjct: 345 CTDSLPVLFKLKFKFANHDRVFSGDGVGTVLLQILDEFLQLIHIIFCNSDI 395


>06_01_0763 + 5712466-5712721,5714302-5715743
          Length = 565

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 203 HCNSHRILHHGLHWILCKADSY 268
           +C+ HR   H + W++ + DSY
Sbjct: 280 YCDDHRQFLHRVQWVILRTDSY 301


>11_01_0768 - 6442332-6443792
          Length = 486

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 126 KQFAKDSIRLVRRCTKPDR 182
           +QF KD+I  V+ C KPD+
Sbjct: 111 EQFTKDAIAAVQECKKPDK 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,347,871
Number of Sequences: 37544
Number of extensions: 181092
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)