Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k02r
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 30 0.33
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 30 0.43
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.99
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 2.3
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 27 3.0
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 26 5.3
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 26 7.0
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 9.3
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 9.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 9.3
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 110 FSLAARSCGTSKYVLSSPTVRMRAFRRPTS---TESPSLDQTVIEEFKDAVSRSRSK 271
F+ A GT +V+++PT FR+ + T +DQ++++ + D S+ + K
Sbjct: 282 FAWEAERSGTRVHVVANPTAGELEFRKNKASRMTTQKHIDQSILDRYGDGTSKVKDK 338
>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Frame = -2
Query: 224 SGPAKETPWRSAV*RLSS*PWDSKGHTWTYHTI------WLPN*TYLRLIKSNIKHSNYK 63
+ P+ WR R+ S P D H W H + + P + RL+ SN + Y
Sbjct: 32 ASPSMHLDWRFPSLRIHSYPKDQSTHAWKMHCMPTEIIAYQPIPVFQRLLHSNDIYFPYF 91
Query: 62 QTMY 51
QT Y
Sbjct: 92 QTRY 95
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 28.7 bits (61), Expect = 0.99
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 107 RFSLAARSCGTSKYVLSSPTVRMRAFRRPTSTESPSLDQTVIEEFKDAVSRSRSKS 274
+FS S S++V+++PT ++ +R + S DQ+ + + A R+ KS
Sbjct: 606 KFSKDPNSSSPSRHVVATPTDKLGTRKRRLRYSTSSFDQSTLRRNRLATIRNARKS 661
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 180 PSDGRPPRSLLRWTRQSLRNSRTLSPEAGPKVPVDY 287
P++ PP+ W R R+ T + +G + P Y
Sbjct: 183 PTEALPPKPTTPWRRNGFRSKTTPNLNSGKETPSSY 218
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 744 DGXPIPIMAHPPATTSDLSLA-EFLST 667
+G P+P+ A PP T D L +F ST
Sbjct: 79 EGKPLPVTALPPKTPEDQKLCNDFFST 105
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 705 TTSDLSLAEFLSTVAQYNNV--NNKQKGVKLD-FKSIEVFSKSQELIAP 568
TTSD+++ ++L A+Y + +N+ L+ F S E+ S S L P
Sbjct: 201 TTSDIAVGDYLDKCAKYLGIPWDNEMPAAALEQFASPEINSTSYSLKPP 249
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/98 (22%), Positives = 41/98 (41%)
Frame = -1
Query: 468 IELGANHPRAVLCMGWTTRYGGNITEGEYTPEQIGSMLRLVNEQKINQTITFPVRAGLAC 289
++LG N VL + T +GGN + + L+ +Q ++ ++ +
Sbjct: 58 LDLGGN----VLLLDKNTAFGGNSVKAASGINAAPTQLQF--DQHVSDSVNTFYNDSILS 111
Query: 288 NSQPVLLDLLRETASLNSSMTVWSSEGDSVEVGRLKAL 175
+LLR S +SS W SE +++ +L L
Sbjct: 112 AKSKAKPELLRTLTSKSSSAVDWLSERFGLQMDQLSRL 149
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 434 YVWAGPLDTVVTSPRGSILLNKLV 363
+ W P D + +PRG+ LN +V
Sbjct: 121 FAWTVPKDPNINTPRGASFLNTVV 144
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 128 SCGTSKYVLSSPTVRMRAFRRPTSTESPSLDQT 226
S SK+ +SS + AF +P S SLDQ+
Sbjct: 1021 SASKSKFCVSSGNTDVAAFTQPAYFGSSSLDQS 1053
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 423 WTTRYGGNITEGEYTPEQIGSMLRLVN 343
+ T+Y G + E ++ EQ+ SML +N
Sbjct: 548 YKTKYNGAMLENKHLKEQVESMLSQLN 574
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 145 VCPFESHGQDESLQTADLHGVSFAGPDSH*G 237
+ PF + + +L T GVS AGP H G
Sbjct: 785 IFPFSNRNECNNLPTPIQRGVSKAGPAKHLG 815
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,880
Number of Sequences: 5004
Number of extensions: 70114
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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