Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k02r
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0554 + 23221374-23222017,23222158-23222296 32 0.45
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 31 0.78
11_01_0606 + 4831102-4833033 30 1.8
03_02_0281 - 7069847-7069876,7070152-7070218,7071320-7071445,707... 30 2.4
08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840 29 3.2
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 29 4.2
03_02_0647 + 10154668-10156041 29 4.2
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 5.5
07_03_0314 + 16669072-16669553,16669936-16671106,16671394-166720... 28 7.3
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427... 28 9.6
>01_05_0554 + 23221374-23222017,23222158-23222296
Length = 260
Score = 32.3 bits (70), Expect = 0.45
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = -1
Query: 507 VKATTTPVDPIKFIELGANHPRAVLCMGWTTRYG--GNITEGEYTP-----EQIGSMLRL 349
V++ T+P+D I F LGA PR+ +G G ++T+ TP +GS +R+
Sbjct: 43 VRSPTSPLDLIFFPGLGAKSPRSSF-LGDRVGLGLVDSLTDDSSTPLGSRKVLLGSEMRI 101
Query: 348 VNEQKINQTITFPVRAGLACNSQPVLLDLLR 256
+ + T PV AG+ + D L+
Sbjct: 102 TDNVTSKNSFTAPVEAGVVDQKDESMCDDLK 132
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 565 Q*TSGDFPIMVKCRHSTWSSKSDNNPR*SHQIHRTRCESSSRCAMY 428
Q T+ F ++++C + T SK +P + Q+ T+ ESS+ CA Y
Sbjct: 114 QDTTQSFSLLMECTNHTTPSKP-MHPHITFQLMHTKIESSNSCAKY 158
>11_01_0606 + 4831102-4833033
Length = 643
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Frame = -1
Query: 534 LNADILPGPVKATTTPVDPIKFIELGANHPRAVLCMGWTT-----RYGGNITEGEYTPEQ 370
L+ ++L G + + D ++ I+L AN ++ ++ R G N+ G PE
Sbjct: 309 LSYNMLNGEMPSDLLSPDSLETIDLTANRLEGLIPGNFSRSLYHLRLGCNLLSGSI-PES 367
Query: 369 IGSMLRLVNEQKINQTITFPVRAGLA-CNSQPVLLDL 262
IG+ +RL + + ++ P+ + L CN+ VL+DL
Sbjct: 368 IGNAIRLAYLELDDNQLSGPIPSQLGKCNNM-VLMDL 403
>03_02_0281 -
7069847-7069876,7070152-7070218,7071320-7071445,
7071727-7071916,7072008-7072110
Length = 171
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -1
Query: 591 KSQELIAPYSKPQVTFPLWLNADILPGPVKATTTPVDPIKFIELGANHPRAVLC 430
K + L +P S P+ F + D L GP+ PVD F HPRAV C
Sbjct: 100 KDKSLRSPLSGPEAFFSEEMQ-DKLWGPLDMRLLPVDSRIFSCYARLHPRAVNC 152
>08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840
Length = 431
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 440 LCYVWAGPLDTVVTSPRGSILL-NKLV 363
LC W GP D + TS G+I L +KLV
Sbjct: 205 LCSKWEGPFDVIDTSSHGAITLRDKLV 231
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 387 EYTPEQIGSMLRLVNEQKINQTITFPVRAGLACNSQ 280
E TPE + S+L L+N KI + P R+G C S+
Sbjct: 344 EVTPESLRSVLPLINWDKI-AAMYLPGRSGAECESR 378
>03_02_0647 + 10154668-10156041
Length = 457
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 108 GSVWQPDRVVR-PSMSFRVPRSG*EPSDGRPPRSLLRWTRQSLRNS 242
G W D+++R P +S G EPS PR++L W S+ +S
Sbjct: 250 GERWTCDQLLRHPFLSAADVHDGGEPSPFPSPRAVLDWAAASMSDS 295
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 366 GSMLRLVNEQKINQTITFPVRAGLACNSQPVLLDLLRETASLNSSMTVWSSEGD 205
G + L+N I + C ++LDL+R +S + +TV S +GD
Sbjct: 461 GYFVELINRSMIQPVEAQGTGHVIGCRVHDMVLDLVRSLSSEENFVTVLSEDGD 514
>07_03_0314 +
16669072-16669553,16669936-16671106,16671394-16672042,
16672165-16672187
Length = 774
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 609 SIEVFSKSQELIAPYSKPQVTFPLWLNADILPGPVKATTTPVDPIKFIELGANH 448
SI F+KSQEL +S + L L+ + L G + + + +K + L NH
Sbjct: 609 SISSFTKSQELHYTFSNYNLVVLLDLSGNSLTGQIPEEISLLLGLKSLNLSGNH 662
>03_01_0578 +
4270835-4271482,4271763-4272140,4272353-4272444,
4272637-4273240
Length = 573
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 107 RFSLAARSCGTSKYVLSSPTVRMRAFRRPTSTES-PSLDQTVIEEFKDAVSR 259
+ +LAA+ GTS V S+PTV+ RR T T S SL ++I+ K R
Sbjct: 300 KLNLAAKPNGTSGTVTSTPTVK----RRVTETVSWDSLPTSLIKSVKVVARR 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,792,257
Number of Sequences: 37544
Number of extensions: 478905
Number of successful extensions: 1260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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