Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k02r
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical...    29   3.7  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF016685-15|AAG24139.2|  321|Caenorhabditis elegans Hypothetical
           protein F59E11.2 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = -1

Query: 774 DIVLGHLTGHDGXPIPIMAHPPATTSDLSLAEFLSTVAQYNNVNNKQKGVKLDFKSIEVF 595
           + + G  T + G  +  +A  P          F   +AQ  + ++K      + +SI   
Sbjct: 231 EFIKGESTEYTGKALARLAMDPGKLKKSGKTLFTEDLAQKYDFSDKHGMEPQNIRSIRTI 290

Query: 594 --SKSQELIAPYSKPQVTFPLWL 532
             +  +E +A Y  PQ+  P W+
Sbjct: 291 LGTMGKEEVAKYIPPQIKLPKWV 313


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 93   YQSKVGSVWQPDRVVRPSMSFRVPRSG 173
            Y +++G  W+P    +  +S RVP+SG
Sbjct: 3426 YYTRLGREWKPPPKAKTPLSIRVPQSG 3452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,358,565
Number of Sequences: 27780
Number of extensions: 399815
Number of successful extensions: 946
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)