Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k02r
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   7.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   7.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.8  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 480 DQRGLLSLLLDQVECRHLTIMGK 548
           D+  +L LL DQ++ R  ++MGK
Sbjct: 91  DEDIMLGLLPDQLQERAQSVMGK 113


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 480 DQRGLLSLLLDQVECRHLTIMGK 548
           D+  +L LL DQ++ R  ++MGK
Sbjct: 91  DEDIMLGLLPDQLQERAQSVMGK 113


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 546 FPLWLNADILPGPVKATTT 490
           F  WL  D +PG V    T
Sbjct: 219 FSFWLGLDAIPGRVALLVT 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,563
Number of Sequences: 438
Number of extensions: 5244
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)