Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k02f
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    27   2.1  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   3.7  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   8.5  

>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 277 DGPPIPIMAHPPATTSDLSLA-EFLST 354
           +G P+P+ A PP T  D  L  +F ST
Sbjct: 79  EGKPLPVTALPPKTPEDQKLCNDFFST 105


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 316 TTSDLSLAEFLSTVAQYNNV--NNKQKGVKLD-FKSIEVFSKSQELIAP 453
           TTSD+++ ++L   A+Y  +  +N+     L+ F S E+ S S  L  P
Sbjct: 201 TTSDIAVGDYLDKCAKYLGIPWDNEMPAAALEQFASPEINSTSYSLKPP 249


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 477 PIMVKCRHSTWSSKSDNNPR*SHQIHRTRCESSS 578
           P M+   H      S+NNPR S++  R   E++S
Sbjct: 176 PSMLAASHQIVPQYSENNPRVSNEPPRVTIENAS 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,015
Number of Sequences: 5004
Number of extensions: 45457
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)