Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k02f
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435...    31   0.53 
03_02_0281 - 7069847-7069876,7070152-7070218,7071320-7071445,707...    30   1.6  
02_04_0053 - 19276891-19277079,19277947-19278073,19278320-192784...    29   2.8  
07_03_0314 + 16669072-16669553,16669936-16671106,16671394-166720...    28   5.0  
07_03_0722 + 20946201-20947327,20949531-20950791                       27   8.7  
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467...    27   8.7  
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    27   8.7  
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349...    27   8.7  

>04_04_1354 -
           32841778-32841983,32842079-32843093,32843184-32843518,
           32843590-32844019,32844155-32844214,32844531-32844651,
           32845321-32846132
          Length = 992

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 456 Q*TSGDFPIMVKCRHSTWSSKSDNNPR*SHQIHRTRCESSSRCAMY 593
           Q T+  F ++++C + T  SK   +P  + Q+  T+ ESS+ CA Y
Sbjct: 114 QDTTQSFSLLMECTNHTTPSKP-MHPHITFQLMHTKIESSNSCAKY 158


>03_02_0281 -
           7069847-7069876,7070152-7070218,7071320-7071445,
           7071727-7071916,7072008-7072110
          Length = 171

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +1

Query: 430 KSQELIAPYSKPQVTFPLWLNADILPGPVKATTTPVDPIKFIELGANHPRAVLC 591
           K + L +P S P+  F   +  D L GP+     PVD   F      HPRAV C
Sbjct: 100 KDKSLRSPLSGPEAFFSEEMQ-DKLWGPLDMRLLPVDSRIFSCYARLHPRAVNC 152


>02_04_0053 -
           19276891-19277079,19277947-19278073,19278320-19278435,
           19279089-19279382
          Length = 241

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 199 TYLEAALASEVAMLEADIV---LGHLTGHDGPPIPIMAHPPATTSDLSLAEF 345
           T++EAA+ + V  ++   +   +G LT   G P P    PP   +  ++A F
Sbjct: 43  THIEAAVTTAVGAVQGAALGGLMGTLTADGGSPFPTPPPPPPNANPQAMASF 94


>07_03_0314 +
           16669072-16669553,16669936-16671106,16671394-16672042,
           16672165-16672187
          Length = 774

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 412 SIEVFSKSQELIAPYSKPQVTFPLWLNADILPGPVKATTTPVDPIKFIELGANH 573
           SI  F+KSQEL   +S   +   L L+ + L G +    + +  +K + L  NH
Sbjct: 609 SISSFTKSQELHYTFSNYNLVVLLDLSGNSLTGQIPEEISLLLGLKSLNLSGNH 662


>07_03_0722 + 20946201-20947327,20949531-20950791
          Length = 795

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 320 RQICHWLNFCRRWHNITTLIINRKELSLTL 409
           R +C +   CR W N+     +RK+L  TL
Sbjct: 30  RSVCRFKRVCRSWRNLIADREHRKKLPQTL 59



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 320 RQICHWLNFCRRWHNITTLIINRKELSLTL 409
           R +C +   CR W N+     +RK+L  TL
Sbjct: 448 RSVCRFKRVCRSWRNLIADREHRKKLPQTL 477


>06_01_0646 +
           4678422-4678508,4679042-4679123,4679236-4679327,
           4679441-4679518,4679635-4679696,4680272-4680993,
           4681115-4681272
          Length = 426

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 541 PIKFIELGANHPRAVLCMG 597
           P KF++LG + P+ VLC G
Sbjct: 191 PEKFVKLGIDPPKGVLCYG 209


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 487 LNADILPGPVKATTTPVDPIK 549
           L   +LPGP+K T TPV   K
Sbjct: 510 LKKGVLPGPIKETPTPVKKTK 530


>02_05_0986 -
           33334205-33334362,33334487-33334662,33334774-33334955,
           33335064-33335282,33335407-33335551,33336127-33336188,
           33336282-33336359,33336517-33336608,33337086-33337167,
           33337519-33337605
          Length = 426

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 541 PIKFIELGANHPRAVLCMG 597
           P KF++LG + P+ VLC G
Sbjct: 191 PEKFVKLGIDPPKGVLCYG 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,568,411
Number of Sequences: 37544
Number of extensions: 292915
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)