Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k02f
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5971| Best HMM Match : ZF-HD_dimer (HMM E-Value=9.8)                85   4e-17
SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_54023| Best HMM Match : F5_F8_type_C (HMM E-Value=0.051)            29   2.9  
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_37007| Best HMM Match : Oleosin (HMM E-Value=0.43)                  28   6.7  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        27   8.8  

>SB_5971| Best HMM Match : ZF-HD_dimer (HMM E-Value=9.8)
          Length = 216

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 52/123 (42%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
 Frame = +1

Query: 235 MLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFLSTVAQYNNVNNKQKGVKLDFKS 414
           MLEAD++L      D   IP+MAHPP+T S+L+L EFL T          ++GVKLDFK+
Sbjct: 2   MLEADVILS-----DSKGIPVMAHPPSTDSNLTLEEFLQTSL------GARRGVKLDFKT 50

Query: 415 IEVFSKSQELIAPYSKPQVTFPLWLNADILPGPVKATTTPVDPIKFIELGAN-HPRAVLC 591
           +E    S +++A  S+  +  P++LNADIL  P     T VD  KFI+      PR  L 
Sbjct: 51  LEAVKPSLDILASNSQHFIDVPVFLNADIL-SPSCVNKTAVDAKKFIQYCTELFPRGELS 109

Query: 592 MGW 600
           +GW
Sbjct: 110 LGW 112


>SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1526

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -1

Query: 242 SSIATSLAKAASKYVLLLTACAQVTVVKFFIVSSSQV 132
           SS+ T+ ++ A++   L TAC Q T+VKF   +S Q+
Sbjct: 14  SSVITTQSQRATREHGLHTACNQSTIVKFLTSNSEQL 50


>SB_54023| Best HMM Match : F5_F8_type_C (HMM E-Value=0.051)
          Length = 241

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/78 (24%), Positives = 31/78 (39%)
 Frame = +1

Query: 313 ATTSDLSLAEFLSTVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKPQVTFPLWLN 492
           A  S ++L     ++  Y+  N    GV +  KS+       E +       V F  W+N
Sbjct: 81  AALSIMALGTRFRSLLGYDPNNKSLYGVDIGLKSVLRVIDPLETVRDRLTAAVPFSTWMN 140

Query: 493 ADILPGPVKATTTPVDPI 546
               P  + AT  P+ P+
Sbjct: 141 LRDSPSTILATEIPLIPM 158


>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 187 VNNKTYL-EAALASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFL 348
           VNN T L + +  + +++L+  + L +L      P+P   HPP     ++LA+FL
Sbjct: 437 VNNNTVLADVSTLNVISLLQYVLFLKYL------PLPTCLHPPPMLEAVNLAQFL 485


>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 442 LIAPYSKPQVTFPLWLNADILPGPVKATTTPVDPI 546
           LI   + P+V +  WL  D  P  +   T PV+P+
Sbjct: 217 LIVNSTSPKVEYEYWLPKDRPPTTIAPITEPVEPV 251


>SB_37007| Best HMM Match : Oleosin (HMM E-Value=0.43)
          Length = 298

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 248 SASSIATSLAKAASKYVLLLTACAQVTVVKFFIVSSSQVTNVAVTNRIMTRNIVI 84
           SA+  A  +    +   +++TA   VT +  FIV+++ +  V  T  I    IVI
Sbjct: 74  SATVTAIVILTLTTAMTVIVTATVTVTAIVIFIVATAMIVIVTATITITVTVIVI 128


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 237  HCNFTC*GSFQICFVVDG 184
            HCN+TC     + F +DG
Sbjct: 3651 HCNYTCKSDIDLVFAIDG 3668


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 244 ADIVLGHLTGHDGPPIPIMAHPPATTSD 327
           AD V G L G D  PIP +  PP    D
Sbjct: 357 ADSVHGRLEGDDDAPIPTLHWPPDPPGD 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,177,753
Number of Sequences: 59808
Number of extensions: 353095
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)