Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k02f
(602 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC020874-1|AAH20874.1| 585|Homo sapiens chromosome 1 open readi... 108 2e-23
BC015993-1|AAH15993.1| 398|Homo sapiens C1orf179 protein protein. 105 9e-23
AY358629-1|AAQ88992.1| 585|Homo sapiens VCRE3034 protein. 105 9e-23
AL590093-2|CAH71608.1| 585|Homo sapiens novel protein protein. 105 9e-23
AL590093-1|CAH71607.1| 311|Homo sapiens novel protein protein. 105 9e-23
AK091901-1|BAC03768.1| 585|Homo sapiens protein ( Homo sapiens ... 103 4e-22
AY358256-1|AAQ88623.1| 276|Homo sapiens AASA9217 protein. 94 3e-19
BC131563-1|AAI31564.1| 276|Homo sapiens AASA9217 protein. 94 4e-19
Z98265-1|CAB44310.1| 797|Homo sapiens plakophilin 3 protein. 33 1.0
BC000081-1|AAH00081.1| 797|Homo sapiens plakophilin 3 protein. 33 1.0
AK223511-1|BAD97231.1| 797|Homo sapiens plakophilin 3 variant p... 33 1.0
AF053719-1|AAF23050.1| 797|Homo sapiens plakophilin-3 protein p... 33 1.0
>BC020874-1|AAH20874.1| 585|Homo sapiens chromosome 1 open reading
frame 179 protein.
Length = 585
Score = 108 bits (259), Expect = 2e-23
Identities = 59/146 (40%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Frame = +1
Query: 169 VTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFL 348
VTW HA N+K + AAL S + +LEAD+ + L + +PIMAHPP T SD +L ++L
Sbjct: 70 VTWYHAANSKKAMTAALDSNITVLEADVNVEGLGTANETGVPIMAHPPTTYSDNTLEQWL 129
Query: 349 STVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKP-QVTFPLWLNADILPGPVKAT 525
V + + QKG+KLDFK+I+ S +L+ ++ +V P+W+NADIL GP
Sbjct: 130 DAV-----LGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWINADILKGPNMLI 184
Query: 526 TTPVDPIKFIEL-GANHPRAVLCMGW 600
+T V+ +F+ L +P+A L GW
Sbjct: 185 STEVNATQFLALVQEKYPKATLSPGW 210
>BC015993-1|AAH15993.1| 398|Homo sapiens C1orf179 protein protein.
Length = 398
Score = 105 bits (253), Expect = 9e-23
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +1
Query: 169 VTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFL 348
VTW HA N+K + AAL S + +LEAD+ + L + +PIMAHPP SD +L ++L
Sbjct: 70 VTWYHAANSKKAMTAALNSNITVLEADVNVEGLGTANETGVPIMAHPPTIYSDNTLEQWL 129
Query: 349 STVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKP-QVTFPLWLNADILPGPVKAT 525
V + + QKG+KLDFK+I+ S +L+ ++ +V P+W+NADIL GP
Sbjct: 130 DAV-----LGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWINADILKGPNMLI 184
Query: 526 TTPVDPIKFIEL-GANHPRAVLCMGW 600
+T V+ +F+ L +P+A L GW
Sbjct: 185 STEVNATQFLALVQEKYPKATLSPGW 210
>AY358629-1|AAQ88992.1| 585|Homo sapiens VCRE3034 protein.
Length = 585
Score = 105 bits (253), Expect = 9e-23
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +1
Query: 169 VTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFL 348
VTW HA N+K + AAL S + +LEAD+ + L + +PIMAHPP SD +L ++L
Sbjct: 70 VTWYHAANSKKAMTAALNSNITVLEADVNVEGLGTANETGVPIMAHPPTIYSDNTLEQWL 129
Query: 349 STVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKP-QVTFPLWLNADILPGPVKAT 525
V + + QKG+KLDFK+I+ S +L+ ++ +V P+W+NADIL GP
Sbjct: 130 DAV-----LGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWINADILKGPNMLI 184
Query: 526 TTPVDPIKFIEL-GANHPRAVLCMGW 600
+T V+ +F+ L +P+A L GW
Sbjct: 185 STEVNATQFLALVQEKYPKATLSPGW 210
>AL590093-2|CAH71608.1| 585|Homo sapiens novel protein protein.
Length = 585
Score = 105 bits (253), Expect = 9e-23
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +1
Query: 169 VTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFL 348
VTW HA N+K + AAL S + +LEAD+ + L + +PIMAHPP SD +L ++L
Sbjct: 70 VTWYHAANSKKAMTAALNSNITVLEADVNVEGLGTANETGVPIMAHPPTIYSDNTLEQWL 129
Query: 349 STVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKP-QVTFPLWLNADILPGPVKAT 525
V + + QKG+KLDFK+I+ S +L+ ++ +V P+W+NADIL GP
Sbjct: 130 DAV-----LGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWINADILKGPNMLI 184
Query: 526 TTPVDPIKFIEL-GANHPRAVLCMGW 600
+T V+ +F+ L +P+A L GW
Sbjct: 185 STEVNATQFLALVQEKYPKATLSPGW 210
>AL590093-1|CAH71607.1| 311|Homo sapiens novel protein protein.
Length = 311
Score = 105 bits (253), Expect = 9e-23
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +1
Query: 169 VTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFL 348
VTW HA N+K + AAL S + +LEAD+ + L + +PIMAHPP SD +L ++L
Sbjct: 70 VTWYHAANSKKAMTAALNSNITVLEADVNVEGLGTANETGVPIMAHPPTIYSDNTLEQWL 129
Query: 349 STVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKP-QVTFPLWLNADILPGPVKAT 525
V + + QKG+KLDFK+I+ S +L+ ++ +V P+W+NADIL GP
Sbjct: 130 DAV-----LGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWINADILKGPNMLI 184
Query: 526 TTPVDPIKFIEL-GANHPRAVLCMGW 600
+T V+ +F+ L +P+A L GW
Sbjct: 185 STEVNATQFLALVQEKYPKATLSPGW 210
>AK091901-1|BAC03768.1| 585|Homo sapiens protein ( Homo sapiens
cDNA FLJ34582 fis, clone KIDNE2008649. ).
Length = 585
Score = 103 bits (248), Expect = 4e-22
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +1
Query: 169 VTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAHPPATTSDLSLAEFL 348
VTW HA N+K + AAL S + +LEAD+ + L + +PIMAHPP SD +L ++L
Sbjct: 70 VTWYHAANSKKAMTAALNSNITVLEADVNVEGLGTANETGVPIMAHPPTIYSDNTLEQWL 129
Query: 349 STVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKP-QVTFPLWLNADILPGPVKAT 525
V + + QKG+KLDFK+I+ S +L+ ++ +V P+W++ADIL GP
Sbjct: 130 DAV-----LGSSQKGIKLDFKNIKAVGPSLDLLRQLTEEGKVRRPIWIDADILKGPNMLI 184
Query: 526 TTPVDPIKFIEL-GANHPRAVLCMGW 600
+T V+ +F+ L +P+A L GW
Sbjct: 185 STEVNATQFLALVQEKYPKATLSPGW 210
>AY358256-1|AAQ88623.1| 276|Homo sapiens AASA9217 protein.
Length = 276
Score = 94.3 bits (224), Expect = 3e-19
Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Frame = +1
Query: 127 FVTCEEETMKNLTTVTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAH 306
F+ + T ++ +TW HA N+K AL S M+EAD++L G + PIMAH
Sbjct: 19 FLRNSQITAEDGAEITWYHAANHKAQTNEALKSTAHMIEADVLLPS-DGSEHSQ-PIMAH 76
Query: 307 PPATTSDLSLAEFLSTVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKPQVTFPLW 486
PP T SD +L E+L+ V + N KG+KLDFKS+ V S L+ K + P+W
Sbjct: 77 PPETNSDNTLQEWLTEVMKSN------KGIKLDFKSLAVVEPSMMLLENV-KRHLKRPVW 129
Query: 487 LNADILPGPVKATTTPVDPIKFIE-LGANHPRAVLCMGW 600
+NADILPGP + +D F++ + + P +GW
Sbjct: 130 INADILPGP-NGNSKVIDAKPFLDTVTSFFPDVTFSLGW 167
>BC131563-1|AAI31564.1| 276|Homo sapiens AASA9217 protein.
Length = 276
Score = 93.9 bits (223), Expect = 4e-19
Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Frame = +1
Query: 127 FVTCEEETMKNLTTVTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPIPIMAH 306
F+ + T ++ +TW HA N+K AL S M+EAD++L G + PIMAH
Sbjct: 19 FLRNSQITAEDGAEITWYHAANHKAQTNEALKSTAHMIEADVLLPS-DGSEHSQ-PIMAH 76
Query: 307 PPATTSDLSLAEFLSTVAQYNNVNNKQKGVKLDFKSIEVFSKSQELIAPYSKPQVTFPLW 486
PP T SD +L E+L+ V + N KG+KLDFKS+ V S L+ K + P+W
Sbjct: 77 PPETNSDNTLQEWLTEVMKSN------KGIKLDFKSLAVVEPSMMLLENV-KRHLKRPVW 129
Query: 487 LNADILPGPVKATTTPVDPIKFIELGAN-HPRAVLCMGW 600
+NADILPGP + +D F++ + P +GW
Sbjct: 130 INADILPGP-NGNSKVIDAKPFLDTVISFFPDVTFSLGW 167
>Z98265-1|CAB44310.1| 797|Homo sapiens plakophilin 3 protein.
Length = 797
Score = 32.7 bits (71), Expect = 1.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 139 EEETMKNLTTVTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPI 291
++E KN+T + W +++ +L+ LA + D+VL L+G GPP+
Sbjct: 416 DDELRKNVTGILWN--LSSSDHLKDRLARDTLEQLTDLVLSPLSGAGGPPL 464
>BC000081-1|AAH00081.1| 797|Homo sapiens plakophilin 3 protein.
Length = 797
Score = 32.7 bits (71), Expect = 1.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 139 EEETMKNLTTVTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPI 291
++E KN+T + W +++ +L+ LA + D+VL L+G GPP+
Sbjct: 416 DDELRKNVTGILWN--LSSSDHLKDRLARDTLEQLTDLVLSPLSGAGGPPL 464
>AK223511-1|BAD97231.1| 797|Homo sapiens plakophilin 3 variant
protein.
Length = 797
Score = 32.7 bits (71), Expect = 1.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 139 EEETMKNLTTVTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPI 291
++E KN+T + W +++ +L+ LA + D+VL L+G GPP+
Sbjct: 416 DDELRKNVTGILWN--LSSSDHLKDRLARDTLEQLTDLVLSPLSGAGGPPL 464
>AF053719-1|AAF23050.1| 797|Homo sapiens plakophilin-3 protein
protein.
Length = 797
Score = 32.7 bits (71), Expect = 1.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 139 EEETMKNLTTVTWAHAVNNKTYLEAALASEVAMLEADIVLGHLTGHDGPPI 291
++E KN+T + W +++ +L+ LA + D+VL L+G GPP+
Sbjct: 416 DDELRKNVTGILWN--LSSSDHLKDRLARDTLEQLTDLVLSPLSGAGGPPL 464
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,992,798
Number of Sequences: 237096
Number of extensions: 1730879
Number of successful extensions: 7242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7224
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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