Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j22r
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    31   0.18 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.7  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.9  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    25   8.9  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 690 RQVNRVFQRNFKYWFSCYLYIDAYRGLKMNIDHPYWYAGSIHRGHCSPLSPGVFPELCHM 511
           R+ ++V    F ++   Y  + A    + +  + Y YA S   G  +PL  G   E  H 
Sbjct: 302 REFSKVIGAAFTFFTILYSAVRAASSRESDDSYSYLYADSHDMGVSTPLEDGSSEEDKHQ 361

Query: 510 S-WLFLWYYLL 481
           S + F+W++++
Sbjct: 362 SDYNFIWFHIV 372


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 705 ARWDLRQVNRVFQRNFKYWFSCYLYIDAYRGLKMNIDHPYWYAGSIH 565
           A + + Q+NRV  R   Y+FS Y  + A   L + +    W   SIH
Sbjct: 461 ALYQIEQLNRVGLRRRSYYFSKYTLLAARSLLAIGVGVTSWNY-SIH 506


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 684 VNRVFQRNFKYWFSCYLYIDAY-RGLKMNIDHPYWYAGSIHRGHCSPLSPGVFPELC 517
           V  V + +  YWF   L ID Y R L   ID  +      H    +PL P V  E C
Sbjct: 481 VQNVLKNDSGYWFQLQLLIDVYSRMLFTMIDDEF------HNDKQNPLYP-VMAEFC 530


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 250  NNIVDLVRNLNYKRSKCQRTSSK**RYI 167
            NNI  L + L  K  KCQ  S    +YI
Sbjct: 1124 NNIKSLTKELENKEEKCQNLSDASLKYI 1151


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 668 KEILNTGFHVIYISMLIEDLK*ISIIPTGTLGL 570
           K+ILN G +VI  +  I+DL   SII  G + +
Sbjct: 281 KKILNAGANVILTTKGIDDLCLKSIIEAGAMAV 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,597
Number of Sequences: 5004
Number of extensions: 51601
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)