Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j22r
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    29   2.7  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    28   8.3  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    28   8.3  
AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 539 PECSPSCVTCHGSSCGTIC*PICPRWQKNIKKVYLFIYL 423
           P C+ S   C GS+  ++C  ICP  + +     ++ +L
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFL 46


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 539 PECSPSCVTCHGSSCGTIC*PICPRWQKNIKKVYLFIYL 423
           P C+ S   C GS+  ++C  ICP  + +     ++ +L
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFL 46


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 172 YIACCSXRQLSVF--NKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIF 29
           +  C S + +++F  N +  QF+   +  H   + L FYS   F+  +IF
Sbjct: 257 HFLCTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLVFYSASTFFIYLIF 306


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 536 ECSPSCV-TCHGSSCGTIC*PIC 471
           +C P+C+ +C  SSC   C P+C
Sbjct: 177 QCMPACLPSCVQSSCAPACQPMC 199


>AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical
           protein Y24D9A.6 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 136 FNKLNAQFINIIVFKHSYCIFLSFYSRDCFYSIVIF 29
           + K N QFI  ++F  S  +   FYS+ CF   + F
Sbjct: 4   YRKKNGQFIFCLIFMCSSPLKKIFYSKTCFTHFLSF 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,647
Number of Sequences: 27780
Number of extensions: 291591
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)