Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j22f
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual 96 3e-21
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 27 1.5
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 1.5
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 27 2.7
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 27 2.7
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 4.7
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 8.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 8.2
>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 96.3 bits (229), Expect = 3e-21
Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Frame = +3
Query: 87 VMANWPALGSIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTV 266
+ NW + ++P GW G + + RKD Y+ K+P + PP FGPAWT+
Sbjct: 11 ISKNW--WSASLVPVACGWFIGNSY--KPRKD------YENKKQPKFHPPASAFGPAWTL 60
Query: 267 LYSSMGYASYLIWEECDGFTEDAVLPLT-LYGVQLLLNWSWTPIFFGLKDFKLAFIEISV 443
LY +MGYAS+L ++ +A + LY QL N++W P+F+GL KLA ++ +
Sbjct: 61 LYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWMPLFYGLAKPKLALADLGI 120
Query: 444 LSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSL 551
L+G ++ + TA LIPYLAWLGYA L
Sbjct: 121 LTGLVGWLAKTWWPLAPTASKWLIPYLAWLGYAGYL 156
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -3
Query: 499 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC----TPYNVR 344
A L T P+ V T +T++S ++K++ +G+ ++L+ SC TP+ +R
Sbjct: 132 APLGTYPHPCVHLTV---NTDVSSPLAIKTYVSSPVGITERLADSCAFVPTPFTIR 184
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 388 VQDQLSSSCTPYNVRGRTASSVKPSHSSQMR 296
+Q LSS T NVR + A+ V+PS S R
Sbjct: 369 IQSTLSSRTTTGNVRTKAANIVRPSSSINRR 399
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +3
Query: 291 SYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLK 410
++++ ++C+GF+ + L L+++ W P+ +G K
Sbjct: 211 NFILGQDCNGFSLGSFLVRRSDWTSRLMDFLWDPVVYGQK 250
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +1
Query: 217 SQAGLPQSGYLVQLGLFSTAAWDMPLTSSGRNVMVLLKMQSYLSHCTEYSCYSTGLGLLF 396
+Q+GL SG + + GLF T NV LL + LSH YS + F
Sbjct: 478 NQSGL--SGSVFRYGLFENYVDSCVTTDEAFNVCDLLSISDCLSHDFPYSYTGDEISTWF 535
Query: 397 S 399
S
Sbjct: 536 S 536
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 232 GVQLGFFNSSYQDFSLLSLRI*PAKNSPLAHPPTFGRII 116
G LG N++Y+ SL I + +P PTFGR+I
Sbjct: 385 GELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVI 423
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +1
Query: 454 QQWQRHCHSAVSIRQPVCYSYHTWLGSDMPAPFLTTS 564
Q+W CH ++ CY + +PA +T S
Sbjct: 799 QKWNEACHVSIHSLMLCCYELPVSIRKQLPAILVTLS 835
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 164 RKEQSIGPSTDIWEDNRTECRPISHYEIF*NGLWVK 57
R+E S D+ D+ E + ++HYE F +W K
Sbjct: 405 REESSTFMDIDVEFDDELEGQSLTHYESFMMFVWKK 440
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 326 SKTITFLPDEVRGISHAAVENSPSWTKYPLWGSPAWLL 213
SK+ L + V +S E++P+ + L G P W +
Sbjct: 595 SKSSNSLKESVEALSEIPFEDAPALDESDLSGDPFWAI 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,302
Number of Sequences: 5004
Number of extensions: 60219
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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