Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j22f
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 80 1e-15
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 33 0.15
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 30 1.4
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 30 1.4
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 30 1.4
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 29 1.9
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 29 1.9
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 29 1.9
AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical ... 29 3.2
AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical ... 29 3.2
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 28 5.7
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 28 5.7
Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical pr... 27 7.5
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical... 27 9.9
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 80.2 bits (189), Expect = 1e-15
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 177 KDNSEKSWYDELKKPSWTPPKW-VFGPAWTVLYSSMGYASYLIWEECDGFT-EDAVLPLT 350
KD W+ LKKP+W P V+ + S +GYASYL+++ GF D L L
Sbjct: 414 KDQQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALG 473
Query: 351 LYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAW 530
LYG + L + PI K+ + +V+S A A + +F ++K AGLL++P+ W
Sbjct: 474 LYGASVTLAVATIPIV-KKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVPFAVW 532
Query: 531 LGYASSLSYYIWKNN 575
+ + L+Y I K N
Sbjct: 533 TAFYAYLAYSIKKEN 547
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 484 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPSHSS 305
LP D V + D E++ S KS P++IG D SSS +VR R PS +
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDLHGIPSKTP 936
Query: 304 Q 302
Q
Sbjct: 937 Q 937
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 484 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPSHSS 305
LP D V + D E++ S KS P++IG D SSS +VR R PS +
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDLHGIPSKTP 936
Query: 304 Q 302
Q
Sbjct: 937 Q 937
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Frame = +1
Query: 340 YLSHCTEYS--CYSTGLGL----LF---SSD*RTSSWHSLRSQCCPGQQWQRHCHSAVSI 492
Y +H TE++ ++ L L LF SS+ W+ +R+ P RH A+ I
Sbjct: 42 YFTHTTEFNKNIHNAPLSLRENTLFAFNSSNCPYKEWNQIRTDSIPNAN--RHADWAIQI 99
Query: 493 RQPVCYSYHT 522
++P Y YHT
Sbjct: 100 KKPSKYLYHT 109
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 363 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWL 533
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 534 GYASSLSY-YIWKN 572
++S + Y+ K+
Sbjct: 166 TFSSGYDFGYLLKS 179
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 363 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWL 533
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 534 GYASSLSY-YIWKN 572
++S + Y+ K+
Sbjct: 166 TFSSGYDFGYLLKS 179
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 499 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 320
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 57 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 116
Query: 319 PSHSSQMR 296
+ Q R
Sbjct: 117 GRNLQQRR 124
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 499 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 320
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 183 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 242
Query: 319 PSHSSQMR 296
+ Q R
Sbjct: 243 GRNLQQRR 250
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 499 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 320
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 1115 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 1174
Query: 319 PSHSSQMR 296
+ Q R
Sbjct: 1175 GRNLQQRR 1182
>AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical
protein M04G7.3b protein.
Length = 437
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 433 SMNASLKSFNPKKIGVQDQLSSSCTPYN 350
S+N+S+K P KIG+ LS+ TP N
Sbjct: 401 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 428
>AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical
protein M04G7.3a protein.
Length = 479
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 433 SMNASLKSFNPKKIGVQDQLSSSCTPYN 350
S+N+S+K P KIG+ LS+ TP N
Sbjct: 443 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 470
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 377 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 490
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 377 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 490
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical
protein T23D5.3 protein.
Length = 237
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 121 SSQMSVDGPMDCSLRVKSVKTTVKSPGMMS*RSQAGLPQSGYLVQLGLFSTAA 279
++Q + GP RV+ V TT +PG + RS + +G G +T +
Sbjct: 80 TTQCTTCGPKTTPQRVEPVMTTTVAPGATTVRSPGSVTTAGSATTAGSATTGS 132
>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
protein Y47D3A.29 protein.
Length = 1428
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 369 LLNWSWTPIFFGLK-----DFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLL 512
L+NWSW + L+ + +I+IS + G + T+ G + LLL
Sbjct: 726 LINWSWNDLLLSLRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLL 778
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,548
Number of Sequences: 27780
Number of extensions: 340652
Number of successful extensions: 924
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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