Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j18f
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine...    27   7.9  

>Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical
           protein C31H5.3 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 395 DYRRXLLAKARHQALSSXSFLPK*WNVHHILHIPTFF*NI 276
           DY++ L    +HQ ++S  +L   W  H++   P+ F NI
Sbjct: 57  DYQQILDIDEKHQIMNSNVWLRMSWTDHYLTWDPSEFGNI 96


>Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical
           protein T28F3.6 protein.
          Length = 252

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 371 KARHQALSSXSFLPK*WNVHHILH 300
           K  H+ +S    LPK   VHH+ H
Sbjct: 183 KTNHEQISGFEILPKLRGVHHVAH 206


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 323 WNVHHI--LHIPTFF*NISLEPYSWCRHS 243
           WN H +  L+ PT        P+ WCRH+
Sbjct: 407 WNTHTVQNLYSPTCNYESKDSPFGWCRHT 435


>AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine
           receptor (63.2 kD)(acr-19) protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 395 DYRRXLLAKARHQALSSXSFLPK*WNVHHILHIPTFF*NI 276
           DY++ L    +HQ ++S  +L   W  H++   P+ F NI
Sbjct: 57  DYQQILDIDEKHQIMNSNVWLRMSWTDHYLTWDPSEFGNI 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,106,598
Number of Sequences: 27780
Number of extensions: 233098
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)