Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j16r
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.54 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   2.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 210 AVKNIPIPSNKKVRCGKTAGFIGDVYRIIDSISRLIF 320
           A K I   +NKK   G +  F   VY++ID+I + I+
Sbjct: 541 ATKQIKDEANKK---GVSLRFYNVVYKLIDNIKKEIY 574


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 192 KLQVLKPQEICSKSYFYHWWPPYFLVSEFYSCCYG*GFMCDINVRYNLSYE*CNNT 25
           K++ LK   I   + F+  W PY+++S +Y       +  D  ++  L    C N+
Sbjct: 255 KIRTLKMTVIII-AVFFICWTPYYVMSLWYWIDRNSAYKIDQRIQKGLFLFACTNS 309


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 392 IPQSLSLSSFIGFVFYS 342
           IP++ + S FIGF  Y+
Sbjct: 698 IPENFNESKFIGFTMYT 714


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 392 IPQSLSLSSFIGFVFYS 342
           IP++ + S FIGF  Y+
Sbjct: 788 IPENFNESKFIGFTMYT 804


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 194 VNEEPGREEYSYSEQQKG*MWKNCRVY 274
           + E   RE YS S +++   +KN R Y
Sbjct: 263 LEERTSRERYSRSREREQKSYKNEREY 289


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 327 ILERNTIKNKTNKTRQ 374
           I ER  IKN  NKT +
Sbjct: 170 IFEREEIKNILNKTNE 185


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 277 ATCTGSLIQFRDSFLWLF*NE 339
           A C  + +Q  D   WLF +E
Sbjct: 231 AQCEATTMQENDKMSWLFESE 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,026
Number of Sequences: 438
Number of extensions: 2218
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)