Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j15f
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...   101   4e-24
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score =  101 bits (243), Expect = 4e-24
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
 Frame = +1

Query: 103 GMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXX 282
           GM  +KYL+F FN +FA+ GL IL +G+   +     ++   E                 
Sbjct: 4   GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLGSII 62

Query: 283 XXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNAS 456
                  CCGA++E+HCM ITF+ FLL I + ++AV +  +  +K+ D   ++       
Sbjct: 63  FVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEI 122

Query: 457 ITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEIN 606
              Y ++   +  ID IQ +LQCCG++S +D+ D   PIP++CC++ E N
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN 170


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 557 SAQSAGLFIPQHCKSVCMISIVFWT 483
           S+QSA + I +   ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 60  IVLLRNKMIHTSAN 19
           +V+ RNK +HT+ N
Sbjct: 76  VVIARNKSMHTATN 89


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 108 VLCKVPHVLLQ 140
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 612  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 514
            A+ID L  A R        GP GR+V +A L V
Sbjct: 967  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 999


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 612  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 514
            A+ID L  A R        GP GR+V +A L V
Sbjct: 963  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,215
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)