Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j14f
         (538 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q99271 Cluster: Na(+)/H(+) antiporter; n=2; Saccharomyc...    33   4.2  
UniRef50_Q468M4 Cluster: Cell surface protein; n=1; Methanosarci...    32   9.6  

>UniRef50_Q99271 Cluster: Na(+)/H(+) antiporter; n=2; Saccharomyces
           cerevisiae|Rep: Na(+)/H(+) antiporter - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 985

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 218 PMCLYWFSYLVWF*NDVITLNLTRL 144
           P+CL WF+ L W  +D ITL +TR+
Sbjct: 54  PVCLNWFNPLKWGNSDSITLEITRI 78


>UniRef50_Q468M4 Cluster: Cell surface protein; n=1; Methanosarcina
           barkeri str. Fusaro|Rep: Cell surface protein -
           Methanosarcina barkeri (strain Fusaro / DSM 804)
          Length = 409

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 240 NIIQNKCYQKNES*S*ARNNVSTNLLKNNMH*QDKPKGL 356
           NII+N     NE    + NN S N+LKNN   Q+K  G+
Sbjct: 177 NIIENNTLNLNEFSGISLNNCSKNILKNNRATQNKIDGI 215


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,910,209
Number of Sequences: 1657284
Number of extensions: 7267400
Number of successful extensions: 14343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14338
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)