Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j14f
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.2  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   6.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.9  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   6.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.1  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 233 NHQFCPMCLYWFSYLVWF*NDVITLNLTR-LQARYNP 126
           N +F    LYW   ++   NDV  + +T+ +Q   NP
Sbjct: 432 NPEFLDAFLYWVDEILANHNDVYFVTMTQVIQWIQNP 468


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 486 NINHCLRFWRRIFYP 530
           NI   LR W R++YP
Sbjct: 61  NIFKQLREWGRLYYP 75


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 236 VNHQFCPMCLYWFSYLVWF 180
           +N    P+   W S+L WF
Sbjct: 576 LNVSSIPIYFKWLSFLSWF 594


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 236 VNHQFCPMCLYWFSYLVWF 180
           +N    P+   W S+L WF
Sbjct: 576 LNVSSIPIYFKWLSFLSWF 594


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 486 NINHCLRFWRRIFYP 530
           NI   LR W R++YP
Sbjct: 61  NIFKQLREWGRLYYP 75


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 52   ISPVLDCCLIIILFEYLICIL 114
            + PV+   L+II+   +IC+L
Sbjct: 1611 VVPVVAAVLVIIVAIIVICVL 1631


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,574
Number of Sequences: 336
Number of extensions: 2140
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)