Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j14f
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    27   9.5  
01_05_0435 + 22117612-22117756,22118054-22118070,22119154-221192...    27   9.5  

>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 399 RPSFQIAVSRN*NFLSLSAYLVNAYCFLISLSKHYYELNFMIRS 268
           RP  +I    N   L  SAYL    C+ I+  K YY L   ++S
Sbjct: 453 RPRMRIGDRVNALELGFSAYLSFCGCYDIAYGKGYYSLFLFLQS 496


>01_05_0435 +
           22117612-22117756,22118054-22118070,22119154-22119224,
           22119314-22119377,22119673-22119720,22119805-22119867,
           22119945-22120001,22120090-22120248,22120324-22120392,
           22120477-22120568,22121129-22121207,22121756-22121918,
           22122524-22122648,22122733-22122995,22123085-22123163,
           22123254-22123415,22123551-22123655,22123782-22123876,
           22123963-22124059,22124154-22124384
          Length = 727

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 361 LPKPFGLSCQCILFFNKFVETLLRA*LY 278
           LP P+ L+   IL FN+F+ TLL+  LY
Sbjct: 597 LPPPWALAAMAILGFNEFM-TLLKNPLY 623


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,201,968
Number of Sequences: 37544
Number of extensions: 175958
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)