Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j12r
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    39   9e-04
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   1.7  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    28   1.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.9  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   6.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   6.8  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   9.0  

>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = -3

Query: 343 LKHQDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAEGQKVKDDPMLL 200
           LKH + K R +E   D+ K ++++E   W  +L +AEG+K+KD+  LL
Sbjct: 123 LKHLEAKKRRIESM-DEEKRRKIEESDKWHRVLLQAEGKKLKDNEQLL 169


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 349 ENLKHQDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAEGQKVK 218
           E  + + E+ R++EEK + TK      + + KTI Q+ E +K +
Sbjct: 602 EPTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQKKTR 645


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 277 MKEKLAWKTILQKAEGQKVKD 215
           +K  +AWK IL+K +G+ +KD
Sbjct: 28  LKIAIAWKIILKKPKGKNIKD 48


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 334 QDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAEGQKVKDD 212
           ++E+  E EEKED   +KE      +   ++K + ++ + D
Sbjct: 297 EEEEEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQD 337


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 334 QDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAEGQKVKDD 212
           ++E+  E EEKED   +KE      +   ++K + ++ + D
Sbjct: 297 EEEEEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQD 337


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 334 QDEKFREMEEKEDKTKVKEMKEK 266
           ++EK R+ E K++K + KE KEK
Sbjct: 444 KEEKRRKKEAKKEKKEKKEKKEK 466


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 352 LENLKHQDEKFREM--EEKEDKTKVKEMKEKLAWKTILQ 242
           LE   ++DE  +++   + E+K K K+ K +  WK +L+
Sbjct: 262 LERQANKDENIKKIINYQTEEKNKNKQSKWQKLWKAVLE 300


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1024

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 355  ILENLKHQDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAEGQKVKDD 212
            +L+N+  +   F ++EE E   K +E + + + KT+ + A   K   D
Sbjct: 933  LLDNVTVEKSPFAQLEELEVVRKKREAEIEASSKTVKRLASNNKFLTD 980


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 340 KHQDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAEGQKVK 218
           K  D K  ++EE+ED  +  E+ E+   KTI+     Q ++
Sbjct: 26  KQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLHIGSQNLR 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,954
Number of Sequences: 5004
Number of extensions: 21332
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)