Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j12r
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0084 - 17788077-17789240                                         36   0.035
07_01_0463 + 3502708-3503535                                           32   0.44 
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728...    32   0.58 
12_01_0817 - 7504778-7504837,7505013-7505260,7506049-7506214,750...    28   7.1  
12_01_0715 - 6230393-6231559,6233234-6234553                           28   7.1  
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678...    28   9.4  
05_05_0304 - 23965842-23965849,23965940-23966107,23966303-239665...    28   9.4  
04_01_0619 - 8125611-8127967,8128449-8130123                           28   9.4  
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84...    28   9.4  

>05_04_0084 - 17788077-17789240
          Length = 387

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -3

Query: 370 KKS*KILENLKHQDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAEGQKVKDDPMLL 200
           +K  +I    K  +E  R  + KED  K      KLAW    ++A G+KV DDP L+
Sbjct: 261 RKKRRIKNKKKALEEAKRMQQAKEDPEKAT----KLAWDLARRRAAGEKVHDDPKLI 313


>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = -3

Query: 370 KKS*KILENLKHQDEKFREM--EEKEDKTKVKEMKEKLAWKTILQKAEGQKVKD 215
           K S K  EN K  D+K  E   E++E K K KEMKEK   K+  +K EG+K KD
Sbjct: 77  KDSKKDKEN-KKSDKKDDEHDDEDEEGKKKEKEMKEKKKDKSD-KKEEGKKKKD 128


>02_02_0157 -
           7280335-7280541,7280656-7280762,7280918-7281097,
           7281182-7281277,7281378-7281459,7281553-7283037,
           7283376-7283450,7283521-7283598,7283708-7283791,
           7283885-7283965,7284073-7284291,7284398-7284648,
           7284748-7284796
          Length = 997

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 13/41 (31%), Positives = 29/41 (70%)
 Frame = -3

Query: 355 ILENLKHQDEKFREMEEKEDKTKVKEMKEKLAWKTILQKAE 233
           I+  +K +++ F  ++EKE+K ++K++ ++ A ++I  KAE
Sbjct: 594 IISLMKQKEDMFMSIKEKENKAELKKIADEDAARSIKDKAE 634


>12_01_0817 -
           7504778-7504837,7505013-7505260,7506049-7506214,
           7506226-7506330
          Length = 192

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 483 QKHKISAPKPVFNTDAKLVFSKFNFDNFGNKEKGSK 376
           QK K SAPKP+   D    + KF    FG   K  K
Sbjct: 149 QKEKRSAPKPLSEDDIISQYEKFEQVKFGKSGKKRK 184


>12_01_0715 - 6230393-6231559,6233234-6234553
          Length = 828

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 386 FSLLPKLSKLNFENTNFASVLKTGLG 463
           F +L  L+ L+  NTNFA ++  G+G
Sbjct: 128 FEMLTGLTHLDLSNTNFAGLVPAGIG 153


>07_03_1126 -
           24166758-24166879,24166948-24167386,24167708-24167875,
           24168388-24168675,24169468-24169575,24169759-24169811,
           24170033-24170192,24170353-24170442,24170902-24170953,
           24171156-24171283
          Length = 535

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 367 KS*KILENLKHQDEKFREMEEKEDKTKVKEMKEKL 263
           K  K  E  K +D++  E EE+E+K KVK+ K KL
Sbjct: 317 KENKDAEANKEEDDE-EEGEEEEEKAKVKKSKTKL 350


>05_05_0304 -
           23965842-23965849,23965940-23966107,23966303-23966575,
           23966676-23967039,23967762-23968133
          Length = 394

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 522 DKSLLEDENNQIEQKHKISAPKPVFNTDAKLVF-SKFNFDNFG 397
           D   +ED+ NQIE   K   P PV  T    +F S   F N G
Sbjct: 211 DYDSIEDQRNQIEVVAKYEIPLPVLKTTNNDIFPSASIFANHG 253


>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 380 DPFSLLPKLSKLNFENTNFASVLKTGLG 463
           D F+  PKL  LNF N + +  +  G+G
Sbjct: 652 DLFNNTPKLKYLNFRNNSLSGTIPVGIG 679


>02_01_0112 -
           839048-839552,839638-839720,839828-839982,840078-840557,
           840855-841097,841189-841403,841489-841756,842477-842525
          Length = 665

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 352 LENLKHQDEKFREMEEKEDKTKVKE-MKEKLAWKTILQKAEGQKVKD 215
           ++N     +K  +  E E+K KV+E +KE L W    Q AE ++ ++
Sbjct: 578 MKNTVGDKDKLADKLESEEKEKVEEALKEALEWLDENQTAEKEEYEE 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,931,860
Number of Sequences: 37544
Number of extensions: 113599
Number of successful extensions: 462
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)