Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j12f
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    29   2.1  
02_03_0311 - 17584700-17584899,17585489-17585603                       28   5.0  
05_05_0304 - 23965842-23965849,23965940-23966107,23966303-239665...    28   6.5  

>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +1

Query: 121 QMIVQKKPRKNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEEK 300
           + I+  +P  + +V+ E+  E NF+    +     ILT    ED  +++   + N+ E++
Sbjct: 315 EQIISSQPSIS-EVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANTNQVEDE 373

Query: 301 DL 306
           DL
Sbjct: 374 DL 375


>02_03_0311 - 17584700-17584899,17585489-17585603
          Length = 104

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 229 LTKGADEDADYEIYTGSKNENEEK 300
           L  G+D+D+DYE Y   K ++EE+
Sbjct: 50  LCDGSDDDSDYEAYMELKMDSEEE 73


>05_05_0304 -
           23965842-23965849,23965940-23966107,23966303-23966575,
           23966676-23967039,23967762-23968133
          Length = 394

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 475 DKSLLEDENNQIEQKHKISAPKPVFNTDAKLVF-SKFNFDNFG 600
           D   +ED+ NQIE   K   P PV  T    +F S   F N G
Sbjct: 211 DYDSIEDQRNQIEVVAKYEIPLPVLKTTNNDIFPSASIFANHG 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,257,944
Number of Sequences: 37544
Number of extensions: 122221
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)