Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j12f
         (603 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122261-1|AAM52773.1|  344|Drosophila melanogaster SD09607p pro...    28   8.5  
AE014297-2728|AAF55714.1|  324|Drosophila melanogaster CG4510-PA...    28   8.5  

>AY122261-1|AAM52773.1|  344|Drosophila melanogaster SD09607p
           protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 472 IDKSLLEDENNQIEQKHKISAPK--PVFNTDAKLVFSKFNF 588
           +   +++ E    + K +I   K  PV+N +AK+V+SK +F
Sbjct: 170 LKNGVVKSEQETEDSKEQIQPVKVQPVYNQEAKIVYSKVDF 210


>AE014297-2728|AAF55714.1|  324|Drosophila melanogaster CG4510-PA
           protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 472 IDKSLLEDENNQIEQKHKISAPK--PVFNTDAKLVFSKFNF 588
           +   +++ E    + K +I   K  PV+N +AK+V+SK +F
Sbjct: 150 LKNGVVKSEQETEDSKEQIQPVKVQPVYNQEAKIVYSKVDF 190


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,119
Number of Sequences: 53049
Number of extensions: 241066
Number of successful extensions: 530
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)