Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j08f
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 96 1e-21
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 1.7
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 2.2
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 25 3.8
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 25 3.8
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 24 6.7
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 24 6.7
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 24 6.7
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 24 6.7
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 23 8.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 23 8.8
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 95.9 bits (228), Expect = 1e-21
Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = +3
Query: 33 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 209
M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ + VD A GR K Y + G +
Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59
Query: 210 RRMGESDDCIVRLTKKDGIL 269
R GESDDCI RLT +DG+L
Sbjct: 60 RSKGESDDCINRLTTQDGLL 79
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 133 SCTEAWSLAWMRRLLAEHFLGQYKST 56
S T+A SL W + +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 2.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 115 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 23
SL M +L EH+ G++ SP CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = -3
Query: 163 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 23
P+ A+T TE W++A+ +A F S C Y+
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYL 528
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = -2
Query: 209 DSPT--DNIHFRCVSSTTCGGVYVSN 138
D PT D I C CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 3 LKNFPLQTYKMQNDAGEFVDLYC 71
+ F TYK ND GEF YC
Sbjct: 198 MDGFSSHTYKFVNDKGEF--YYC 218
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/54 (22%), Positives = 21/54 (38%)
Frame = -3
Query: 184 LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 23
L VS+ S ++ W+ W L E F+ + TN+ + Y+
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYI 223
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 23.8 bits (49), Expect = 6.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 277 FLASIPSFFVNLTMQSSDSPILRIAPQTTYILDVSAARP 161
F S+P V L D+P + + P ++YI SA P
Sbjct: 288 FPLSLPGQSVELAW---DAPGMAVGPNSSYITSTSAGTP 323
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 6.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +3
Query: 6 KNFPLQTYKMQNDAGEFVDLYCPRKCSASNRLIHAKD--HASVQ--LVIADVDPATGRAA 173
K+F T ND G L C R+ +AS+ D +SVQ +V+ P G
Sbjct: 57 KDFVYFTLPFPNDEGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAVVVITTSPPFGHIK 116
Query: 174 D 176
D
Sbjct: 117 D 117
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 18 LQTYKMQNDAGEFVD 62
+Q K QND GEF+D
Sbjct: 269 IQLAKTQNDLGEFLD 283
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 23.4 bits (48), Expect = 8.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 1 DLKTFHCRHIKCRTTPVNSLTCTAR-GNARPATASSTLRTM 120
D F C H+ ++PVN + R G A AS+++ +M
Sbjct: 419 DAGAFECLHVFSFSSPVNCIDWNLREGTPILAVASNSIVSM 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,581
Number of Sequences: 5004
Number of extensions: 23405
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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