Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j08f
(327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 112 7e-26
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 27 2.4
Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 25 9.7
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 25 9.7
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 25 9.7
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 112 bits (269), Expect = 7e-26
Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = +3
Query: 33 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 209
MQNDAG+ V+LY PRKCS+SNR+I KDHASVQ+ DVDP TGR S Y +CGAI
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60
Query: 210 RRMGESDDCIVRLTKKDGILAKN 278
RRMGESDD I+RL +KDG++ ++
Sbjct: 61 RRMGESDDAILRLAQKDGLVPRD 83
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 115 SLAWMRRLLAEHFLGQYKSTNSPASFCILYVCNG 14
S W+ RL A L Y ST A+ + +CNG
Sbjct: 92 SATWLVRLSASLSLPVYPSTLKEANLFVTVICNG 125
>Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical
protein T25E12.4b protein.
Length = 220
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 147 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 263
V + G + +S + A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 118 WSLAWMRRLLAEHFLGQYKS 59
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 230 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 135
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 230 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 135
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 25 HIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 126
H+ ++ N + C A+ P AS L MLQ
Sbjct: 696 HVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 25 HIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 126
H+ ++ N + C A+ P AS L MLQ
Sbjct: 696 HVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = -3
Query: 202 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCIL 29
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 86 GQQPPHPR*GPCF 124
GQQPPHP+ P F
Sbjct: 19 GQQPPHPQIDPLF 31
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = -3
Query: 202 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCIL 29
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,613,762
Number of Sequences: 27780
Number of extensions: 138140
Number of successful extensions: 421
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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