Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j04r
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    35   0.015
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    28   1.8  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    28   1.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.8  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   5.4  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   7.1  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   7.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   9.4  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 435 HPALERPSQRGLARADGVPLEAPPPPQDRSHQTEDVREQPPGRGL 301
           H A+  P+    A   G P + PPPPQ +SH    V    P R +
Sbjct: 90  HTAIPNPANGYAAVYGGPPSQLPPPPQPQSHPNVTVISASPARAI 134


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
 Frame = -2

Query: 593 VMWKKDKQTYWQKTPFRAV---AENGIQLKLVNSK---TGPGKILRNALWNTNST 447
           V+WK+  +T ++  P+R +   A NG+ ++LV SK   T   K + N    +N+T
Sbjct: 350 VVWKESTRTVFETVPWRILSSQATNGL-IELVRSKTRLTSKNKTVSNVYDESNAT 403


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 639 IIVIYLCVDEDGPLVVDSAEAVESDRQTR 725
           +++ +LCVD+ G +V DS++ V  D + +
Sbjct: 219 LLMNHLCVDQHGRIVFDSSDTVIKDLENK 247


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -2

Query: 371  LLHRPKIGLIRLKMYENNRLVADSGNTYDFTLKGGRLGVFCFSQEMII 228
            ++ RP  GL  +K+  NN L  D+GN    TL+  ++G    ++E+++
Sbjct: 962  IMLRPYNGL-EVKLNANNNLEIDTGNIPSLTLR-RQIGFLTMTEELLL 1007


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 422 KDPRNVGWREQTAYRWK-LLHRPKIGLI 342
           +D  + GW+ QTA+ W  LLH  K+G++
Sbjct: 286 RDLWSCGWK-QTAFPWSNLLHHIKLGML 312


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 527 GIQLKLVNSKTGPGKILRNALWNTNSTPDQVT 432
           GI+L +VN K  P K  +  L+   S+P  +T
Sbjct: 137 GIELLIVNEKIIPQKTQKYLLYELFSSPSSIT 168


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
            Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
 Frame = -2

Query: 389  TAYRWKLLHRPKIGLIRLKMYENNRLVADSG----NTYDFTLKGGRLGVFCFSQEMIIWS 222
            T  + +L H P+  L  LK+Y   + + DS     N Y+  + G R  +    + ++I  
Sbjct: 731  TPEKCRLPHPPRSDLEALKLYRTRKEILDSFISTLNAYENQMHGERSILLELIRTILITI 790

Query: 221  NLLYKCND------KIPASIASEISTRNHFEI 144
            N   K  +       +P+ I   I+  NH+ +
Sbjct: 791  NPTLKQKEDSMPRSALPSKIEHAINILNHYNL 822


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 450 YPGSGHPALERPSQRG 403
           YPG G P  + PSQRG
Sbjct: 339 YPGFGMPLPKNPSQRG 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,118
Number of Sequences: 5004
Number of extensions: 72291
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)