Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j04r
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 31 0.94
Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical p... 29 2.9
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 29 2.9
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 29 2.9
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 29 2.9
Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 3.8
AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein. 29 3.8
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 29 5.0
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 31.1 bits (67), Expect = 0.94
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 438 GHPALERPSQRGLARADGVPLEAPPPPQDRSHQT-EDVREQPPGRGLWEH 292
G+P Q P +APPPPQD + E P G+ LW H
Sbjct: 266 GNPGTCHHCQNRAPAPSEAPGKAPPPPQDYTRPAPESYPSAPNGQYLWIH 315
>Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical
protein K08F4.2 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 411 QRGLARADGVPLEAPPPPQDRSHQTEDVREQPPGRGLWEHL 289
++ +A+ P A PPQ R+ E V+EQP + W +L
Sbjct: 214 EKEVAKTPQKPQLAQQPPQQRAPVPEPVQEQPKVQKTWANL 254
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 591 DHIKPLVALVSKNKSNIIVIYLCVDEDGPLVVDSAEAVESDRQTRVRVQGLQDLSSVVXH 770
D PL L+ N + + LC DGP+V +E T VR+ G +DL+S +
Sbjct: 253 DEPNPLTKLIEDNVTYTKLYQLCKIPDGPIV---EHHIEMHFVTAVRM-GHRDLASALAQ 308
Query: 771 PPV 779
PV
Sbjct: 309 GPV 311
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 591 DHIKPLVALVSKNKSNIIVIYLCVDEDGPLVVDSAEAVESDRQTRVRVQGLQDLSSVVXH 770
D PL L+ N + + LC DGP+V +E T VR+ G +DL+S +
Sbjct: 253 DEPNPLTKLIEDNVTYTKLYQLCKIPDGPIV---EHHIEMHFVTAVRM-GHRDLASALAQ 308
Query: 771 PPV 779
PV
Sbjct: 309 GPV 311
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 591 DHIKPLVALVSKNKSNIIVIYLCVDEDGPLVVDSAEAVESDRQTRVRVQGLQDLSSVVXH 770
D PL L+ N + + LC DGP+V +E T VR+ G +DL+S +
Sbjct: 253 DEPNPLTKLIEDNVTYTKLYQLCKIPDGPIV---EHHIEMHFVTAVRM-GHRDLASALAQ 308
Query: 771 PPV 779
PV
Sbjct: 309 GPV 311
>Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical
protein F11C3.2 protein.
Length = 598
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 139 WSISKWFLV--EISDAMLAGILSLHL*SRLDHM---IISWEKQNTPSLPPFRVK 285
W++S+ +V EI + L G+L LH L+ + I S++ +P L P RVK
Sbjct: 13 WTLSRRLIVAGEIGNVFLIGVLYLHAYIWLNTLHCEISSFKNPTSPPLSPARVK 66
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 375 EAPPPPQDRSHQTEDVREQPPGR 307
E PP QDR E VRE PP R
Sbjct: 625 EVAPPRQDRYEDEERVREPPPKR 647
>AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein.
Length = 598
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 139 WSISKWFLV--EISDAMLAGILSLHL*SRLDHM---IISWEKQNTPSLPPFRVK 285
W++S+ +V EI + L G+L LH L+ + I S++ +P L P RVK
Sbjct: 13 WTLSRRLIVAGEIGNVFLIGVLYLHAYIWLNTLHCEISSFKNPTSPPLSPARVK 66
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/73 (31%), Positives = 27/73 (36%)
Frame = -1
Query: 534 RERHTAQAGQLEDWPGEDTQERSLEY*LYPGSGHPALERPSQRGLARADGVPLEAPPPPQ 355
RER G E P D + S E PGS P + A P PPPP
Sbjct: 877 RERLDDPQGLRESSPSSDESDSSSEA---PGSPRQQDPEPIE-AFTEASEAP---PPPPN 929
Query: 354 DRSHQTEDVREQP 316
S E + +QP
Sbjct: 930 QGSEDPESILDQP 942
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,663,677
Number of Sequences: 27780
Number of extensions: 426150
Number of successful extensions: 1374
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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