Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j04f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    29   0.41 
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   3.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   5.1  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   6.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.9  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 211 ILIL*YTKTKNYMFFSKIFPLFINTK--HFSYIYRVIANHFI 92
           IL++ +   KN+ FF K + LF+ +K     + YRV+   F+
Sbjct: 228 ILLVAFASQKNFWFFEKTYDLFMQSKLTWRPFTYRVLIESFM 269


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 394 NSDILIPILNIILMFNYLYKNLQSTIPFL 308
           +SD+LIP+++  L++ Y  K     IPFL
Sbjct: 42  SSDLLIPLISDFLIWFYYQKTPLKWIPFL 70


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 477 HRHHSKDREDSCAHGRNRHVC*NVTITKIP 388
           H HH K +  S  H  N     ++T T  P
Sbjct: 557 HHHHKKSKSSSSKHKENDKASVSITTTTTP 586


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 415 LKCYNHENSDILIPILNIIL 356
           L+  NHEN+DI I +L +++
Sbjct: 151 LELMNHENADITITVLELLI 170


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 566 SIATSPRSRADEAAAINSSVASRSIVREFTIATTARTEK 450
           ++AT+P+S AD  A  +  V S++ V   T +TT +T K
Sbjct: 255 NVATAPKSWADLIARNHPDVKSQASVSS-TASTTGQTVK 292


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 414  SRHGDSGHVRTNLLCPCCG 470
            S  G  GH++TN +CP  G
Sbjct: 948  SNCGQVGHMKTNKICPLFG 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,223
Number of Sequences: 5004
Number of extensions: 39808
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)