Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j04f
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 30 1.3
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 30 1.7
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 29 3.0
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 29 4.0
12_02_0423 + 18944555-18945226,18945309-18945545 28 5.2
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730 28 6.9
01_06_1191 - 35297005-35297473,35297812-35298965 28 6.9
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203... 27 9.2
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 9.2
01_06_1393 - 36999631-36999723,37000244-37000393,37000413-370005... 27 9.2
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -2
Query: 439 TWPESPCLLKCYNHENSDILIPILNIILMFNYLYKNLQSTIPFLKLIKDHAKNSNIDKN 263
++ E C L + S ILI L+ IL+ NY + L + L ++D KNS+I ++
Sbjct: 528 SFKEKVCALAVDVEKCSRILIDSLSDILLSNYNIEILNKLLSGLSHLEDRIKNSDITQS 586
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 433 PESPCLLKCYN-HENSDILIPILNIILMFNYLYK 335
P +P LL+ YN H N +I I + +F YLYK
Sbjct: 830 PYNPYLLRMYNCHMNVEICSSIKAVKYLFKYLYK 863
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -2
Query: 406 YNHENSDILIPILNIILM--FNYLYKNLQSTIPF 311
YNH N + + + N+ + FN Y NL IPF
Sbjct: 474 YNHLNGSLPMQLANLSFLCSFNVAYNNLSGEIPF 507
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 423 GDSGHVRTNLLCPCCGGDGE 482
G GH+RTN LCP G D E
Sbjct: 1389 GQLGHMRTNKLCPKYGEDPE 1408
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 495 HSEGVHHRHHSKDREDSCAHGRNRHV 418
H +G HH HH++ + + A R R +
Sbjct: 150 HDDGRHHHHHNQAVQSAAARERRRRI 175
>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
Length = 802
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 160 IFPLFINTKHFSYIY 116
+FPL +NT+HFSY +
Sbjct: 134 VFPLDVNTRHFSYTH 148
>01_06_1191 - 35297005-35297473,35297812-35298965
Length = 540
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 325 STIPFLKLIKDHAKNSNIDKNI--TLIAL*I*PF*ELLNTILIL*YTKTKNYMFFSKIFP 152
+T+ +L I + A NS + ++ + + L + L T L +KTK Y+ + + P
Sbjct: 119 NTVSYLLCINNFASNSRVAVSLATSYLGLSAKVYTSLAETFPGLANSKTKTYLLLNAVVP 178
Query: 151 LFI 143
LF+
Sbjct: 179 LFV 181
>10_07_0044 + 12319382-12319532,12319978-12320163,12320247-12320396,
12320495-12320644,12320728-12321417,12321641-12322033,
12322073-12322546,12322634-12323974,12324042-12324388
Length = 1293
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 427 SPCLLKCYN-HENSDILIPILNIILMFNYLYK 335
+P LL+ YN H N ++ I + +F YLYK
Sbjct: 1031 NPYLLRMYNCHMNVEVCSSIKAVKYLFKYLYK 1062
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 495 HSEGVHHRHHSKDR-EDSCAHGRNRH 421
H +G HHRHH R +HG + H
Sbjct: 530 HQKGRHHRHHHDHRHRHGHSHGDHHH 555
>01_06_1393 -
36999631-36999723,37000244-37000393,37000413-37000500,
37001362-37001465,37003115-37003192,37004247-37004369,
37004508-37004615
Length = 247
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 587 FPCGPRTSIATSPRSRADEAAAINSSVASRSIVREFTIATTARTEKIRAHMAGIA-MSAK 411
F C P T+ T S+A + + I+R++ RT K R H I+ +
Sbjct: 6 FWCSPTTTAITPVASQAPKLPSEIVGKNVEQIIRDWNNELQDRTAKFRKHATAISEWDRR 65
Query: 410 MLQSR 396
+LQ+R
Sbjct: 66 ILQNR 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,977
Number of Sequences: 37544
Number of extensions: 226047
Number of successful extensions: 701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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