Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j04f
         (623 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030706-1|AAH30706.1|  611|Homo sapiens PRKD3 protein protein.        32   1.4  

>BC030706-1|AAH30706.1|  611|Homo sapiens PRKD3 protein protein.
          Length = 611

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -1

Query: 617 AWSNSSRLALFPCGPRTSIATSP-RSRADEAAAINSSVASRSIVREFTIATTAR---TEK 450
           +W  + R AL P  P+ S+ TSP R +  +  + + SV++  I     I+T  +    E 
Sbjct: 522 SWEKAIRQALMPVTPQASVCTSPGRGKDHKDLSTSISVSNCQIQENVDISTVYQIFADEV 581

Query: 449 IRAHMAGIAMSAKMLQ 402
           + +   GI    K LQ
Sbjct: 582 LGSGQFGIVYGGKQLQ 597


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,375,139
Number of Sequences: 237096
Number of extensions: 1192834
Number of successful extensions: 2718
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2717
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)