Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j04f
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    31   0.67 
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    31   0.67 
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC084158-15|AAK68556.1|  190|Caenorhabditis elegans Hypothetical...    29   3.6  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    28   4.7  
U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform b protein.
          Length = 1051

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 493 MDREATEELIAAASSARDRGEVAILVRGPHGK 588
           M  E T EL+A      DR  ++++V+GP GK
Sbjct: 277 MGNEETHELLAILDFNNDRKRMSVIVKGPDGK 308


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 493 MDREATEELIAAASSARDRGEVAILVRGPHGK 588
           M  E T EL+A      DR  ++++V+GP GK
Sbjct: 448 MGNEETHELLAILDFNNDRKRMSVIVKGPDGK 479


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 450 LLCPCCGGDGELPHYG 497
           +LC  CG DG  PHYG
Sbjct: 12  MLCLVCGADGSEPHYG 27


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -1

Query: 611 SNSSRLALFPCGPRTSIATSPRSRADEAAAINSSV--ASRSIVREFTIATTARTEKIRAH 438
           +++S ++LFP G  TS  T+P + AD    I++ +  A   +    T A     + +R  
Sbjct: 450 ASTSGISLFPSGGVTSSLTTPSTTADTHTPIDNKIEQAMELVKTHLTYAVREEVDTLRNT 509

Query: 437 MAGIAMSAKMLQSRKFRYFNSN 372
           +A +    +  Q  +  Y+  N
Sbjct: 510 IAELEYQMRESQ-YECTYYRQN 530


>AC084158-15|AAK68556.1|  190|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.12 protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 590 LFPCGPRTSIATSPRSRADEAAAINSSVASRSIVREFTIATTARTEKIRAHMAGIAMSAK 411
           L  C   ++    P  ++++  A  S+    + +RE  + T A  +KIRAHM   A+  K
Sbjct: 53  LLQCSSSSAGEIHPSEKSEKGGA-TSAPPKNTEMREKLLETQANLQKIRAHMKKNALRHK 111

Query: 410 M-LQSRKFR 387
              ++ KF+
Sbjct: 112 SDTRTSKFK 120


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 132 CLVFINKGNIFEKNM*FLVLVYYNINIVFKSS*KGQIYKAISVIFLSMFEFLAWSFINFK 311
           C++F +   I  ++   +V V  N NI+ KS+    ++  IS +   +F  L W FI  +
Sbjct: 203 CIIFYSSTEIKYESPERMVYVM-NPNIIKKSTKTAFVFVIISCLICLIFYSLIWKFIKTR 261

Query: 312 NGIV 323
           +  V
Sbjct: 262 SQTV 265


>U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical
           protein Y102E9.5 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 495 HSEGVHHRHHSKDREDSCAHGRNRHVC 415
           HS  V HR+  K R     +GR+R  C
Sbjct: 132 HSNNVRHRYSDKTRHFQLINGRSRFCC 158


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 495 HSEGVHHRHHSKDREDSCAHGRNRH 421
           H      RHH++DR     H RNRH
Sbjct: 97  HQNQDRSRHHNQDRNRRQNHDRNRH 121


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 495  HSEGVHHRHHSKDREDSCAHGRNRH 421
            H      RHH++DR     H RNRH
Sbjct: 941  HQNQDRSRHHNQDRNRRQNHDRNRH 965


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,015,912
Number of Sequences: 27780
Number of extensions: 217410
Number of successful extensions: 745
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)