Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j02f
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41531-6|AAA83160.1| 144|Caenorhabditis elegans Hypothetical pr... 34 0.074
Z74038-4|CAA98495.1| 125|Caenorhabditis elegans Hypothetical pr... 33 0.23
AF045646-4|AAK29837.2| 295|Caenorhabditis elegans Hypothetical ... 30 1.2
AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical ... 30 1.2
U88168-6|AAC24401.1| 127|Caenorhabditis elegans Hypothetical pr... 30 1.6
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 29 2.1
AF016664-10|AAB66064.3| 330|Caenorhabditis elegans Serpentine r... 29 2.1
Z74038-7|CAE17835.1| 132|Caenorhabditis elegans Hypothetical pr... 29 2.8
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 28 4.9
AF039041-5|AAB94187.1| 128|Caenorhabditis elegans Hypothetical ... 28 4.9
Z49966-7|CAD57696.1| 125|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF045646-12|AAL32222.1| 183|Caenorhabditis elegans Hypothetical... 28 6.4
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 28 6.4
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 28 6.4
Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical p... 27 8.5
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 8.5
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 8.5
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 8.5
AC084158-18|AAK68583.1| 300|Caenorhabditis elegans Hypothetical... 27 8.5
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 27 8.5
>U41531-6|AAA83160.1| 144|Caenorhabditis elegans Hypothetical
protein T07D1.3 protein.
Length = 144
Score = 34.3 bits (75), Expect = 0.074
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 349 GWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASLPVMGTTVMLLTLALLKF*PSLSN 525
GW + C + +G + E+C C D CNS V T++ L T L+ F P L N
Sbjct: 89 GWQQKKTGEYCRKSRDYGKKGEICCCADDMCNS----VRQTSLALFTSILIIF-PVLLN 142
>Z74038-4|CAA98495.1| 125|Caenorhabditis elegans Hypothetical
protein F58B4.3 protein.
Length = 125
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Frame = +1
Query: 229 LPDTL-RQPCKSTDTMCRKISQVVEFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGG 405
+PDT RQ C C K VV+F + + N C S FG
Sbjct: 31 VPDTSQRQECGIGSLTCVK---VVDFTRGTYTKQCQTMNCTLNGMQNAAANCQNSSAFGV 87
Query: 406 RQEVCSCLTDGCNSA 450
C C DGCNS+
Sbjct: 88 NGATCCCYGDGCNSS 102
>AF045646-4|AAK29837.2| 295|Caenorhabditis elegans Hypothetical
protein F56B3.2b protein.
Length = 295
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +1
Query: 142 ALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGM 318
A CG E G + QC + ++ L + L+ P +S C + + M +
Sbjct: 152 AQCGGGE-GMECMKGQCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAV 210
Query: 319 PPDNR--VIRGCGWDESNYKGRCYQRSGFGGRQEVC 420
P ++ + + C + Y+GRC R GF + C
Sbjct: 211 PLNSLCFIQKQCPQNSGCYRGRCMCRCGFAAKNGKC 246
>AF045646-3|AAK29836.2| 432|Caenorhabditis elegans Hypothetical
protein F56B3.2a protein.
Length = 432
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +1
Query: 142 ALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFE-MNGM 318
A CG E G + QC + ++ L + L+ P +S C + + M +
Sbjct: 289 AQCGGGE-GMECMKGQCQCQQNFHPAVDVLTNPLKNPSQSCSRDCESENLSKDTSCMKAV 347
Query: 319 PPDNR--VIRGCGWDESNYKGRCYQRSGFGGRQEVC 420
P ++ + + C + Y+GRC R GF + C
Sbjct: 348 PLNSLCFIQKQCPQNSGCYRGRCMCRCGFAAKNGKC 383
>U88168-6|AAC24401.1| 127|Caenorhabditis elegans Hypothetical
protein K11H12.7 protein.
Length = 127
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/111 (23%), Positives = 40/111 (36%)
Frame = +1
Query: 118 MAYFFVFAALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVV 297
M + VFA+L A+ CY CNS N C+ P KS M
Sbjct: 1 MRFLIVFASLFAV---SAALNCYICNSLNQPECVHNYEKFNKICPVKSFGGMKSVKPLGC 57
Query: 298 EFEMNGMPPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSA 450
+ + ++R C + + + R + G + C + CNSA
Sbjct: 58 RVSRQYVKEETSIVRECAYTGEDIE-RKSNKGSLGVSRVYSQCSENLCNSA 107
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/101 (26%), Positives = 44/101 (43%)
Frame = +1
Query: 142 ALCGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQVVEFEMNGMP 321
A CG ++ G +C Q + +C P +QP C I +V
Sbjct: 1526 ANCGNIQCGTNQICIQ----DSCQC----RPGYYQQPGSCLQDRCNCIQEVES------- 1570
Query: 322 PDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCN 444
D+ + R CG ++ + +C RSG+ QE +C++D CN
Sbjct: 1571 -DSCLNRQCGMNQVCIQDQCQCRSGYLVLQE--TCISDRCN 1608
>AF016664-10|AAB66064.3| 330|Caenorhabditis elegans Serpentine
receptor, class i protein37 protein.
Length = 330
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -1
Query: 636 ISLDLFLVLENVCINVSSDLNYPSNYDEHKSPV 538
I++DLFL+L+++ ++S PSNYD H+S V
Sbjct: 211 ITIDLFLLLKSMQKSLS-----PSNYDRHRSAV 238
>Z74038-7|CAE17835.1| 132|Caenorhabditis elegans Hypothetical
protein F58B4.6 protein.
Length = 132
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 379 CYQRSGFGGRQEVCSCLTDGCNSA-SLPVMGTTVMLLTLALLKF 507
C+ + C C DGCNS+ S+ +G++++ + +++ F
Sbjct: 88 CFNTTSGSSVMGTCCCYGDGCNSSPSMLPLGSSILAVMISMFIF 131
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 151 RTKPRKRKSTPFYSLSR*YRFSPLRTENATNSRRPHRHTVRRPGRHARN 5
R++ R +P SR S RT +SRR + RR GRH+R+
Sbjct: 301 RSRSRSLSKSPARRRSRHLSRSGSRTPAQRHSRRSESTSRRRSGRHSRS 349
>AF039041-5|AAB94187.1| 128|Caenorhabditis elegans Hypothetical
protein W03F8.6a protein.
Length = 128
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 373 GRCYQRSGFG-GRQEVCSCLTDGCNSASLPVMGTTVMLLTLALL 501
G+C++ G G ++ C C + CNS++ + T +L+ L+L+
Sbjct: 82 GKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGILIILSLV 125
>Z49966-7|CAD57696.1| 125|Caenorhabditis elegans Hypothetical
protein F35C11.7 protein.
Length = 125
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 161 SKAKQSSATNATVTTTPDASWRTCRTRCGS 250
+ A QSS + +T T + W TC CGS
Sbjct: 32 TNAPQSSTSCSTATWLVWSDWSTCSDECGS 61
>AF045646-12|AAL32222.1| 183|Caenorhabditis elegans Hypothetical
protein F56B3.12 protein.
Length = 183
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 49 VVVSWLRFRFAAGKTGIISTMNKMAYFFVFAALCGFVEQGQAIVCYQCN--SHNDSRCIM 222
V+ SW + F+ G + + K AY + G V G V + N S + R I
Sbjct: 109 VIPSWDQHFFSVLPMGNLLAVIKAAYDL---DITGLVNYGTQTVASRINGKSAEEMREIF 165
Query: 223 EDLPDTLRQPCKSTDT 270
+ LP+ +QP STDT
Sbjct: 166 Q-LPEPCQQPSTSTDT 180
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 157 VEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ 291
++Q QA QC S C+ + P T +P + +T C I Q
Sbjct: 190 IQQAQAQCQPQCQQQCQSSCVQQQQPSTQCEP--ACNTQCSDICQ 232
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 157 VEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQPCKSTDTMCRKISQ 291
++Q QA QC S C+ + P T +P + +T C I Q
Sbjct: 190 IQQAQAQCQPQCQQQCQSSCVQQQQPSTQCEP--ACNTQCSDICQ 232
>Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical
protein ZK287.9 protein.
Length = 117
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 379 CYQ-RSGFGGRQEVCSCLTDGCNSASLPVMGTTVMLLTLAL 498
CY R G Q+ C C D CNS + P+ +V + ++L
Sbjct: 73 CYPTREENGVTQKWCCCQKDMCNSVNSPMALFSVFFIVVSL 113
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 PDNRVIRGCG-WDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASL 456
P V+R C + E G C ++ G ++ CLTD C+S L
Sbjct: 750 PCEGVLRDCEEFGEWKEWGSCSEKCALGVQKRFRPCLTDQCSSKHL 795
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 PDNRVIRGCG-WDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASL 456
P V+R C + E G C ++ G ++ CLTD C+S L
Sbjct: 750 PCEGVLRDCEEFGEWKEWGSCSEKCALGVQKRFRPCLTDQCSSKHL 795
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 208 SRCDCCIGSRRLLGLAPQNRTKPRKRKSTPFYSLSR*Y--RFSPLRTENATNSRRPHRHT 35
SR D ++R +GL R R RKS+P R SP + R H
Sbjct: 381 SRRDDSPNAKRSIGLKSPERRSSRDRKSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPE 440
Query: 34 VRRPGRH 14
+R GRH
Sbjct: 441 QKRNGRH 447
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 208 SRCDCCIGSRRLLGLAPQNRTKPRKRKSTPFYSLSR*Y--RFSPLRTENATNSRRPHRHT 35
SR D ++R +GL R R RKS+P R SP + R H
Sbjct: 381 SRRDDSPNAKRSIGLKSPERRSSRDRKSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPE 440
Query: 34 VRRPGRH 14
+R GRH
Sbjct: 441 QKRNGRH 447
>AC084158-18|AAK68583.1| 300|Caenorhabditis elegans Hypothetical
protein Y69A2AR.9 protein.
Length = 300
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 114 IHCRDNTGFPRCEPKTQPTHDDRIGTLFDVQDDTLATT 1
I+C++N+ P C P+ D+ T + T +TT
Sbjct: 86 IYCKNNSSSPDCLTTIAPSEDNSTTTASSTEATTFSTT 123
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 322 PDNRVIRGCG-WDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSASL 456
P V+R C + E G C ++ G ++ CLTD C+S L
Sbjct: 750 PCEGVLRDCEEFGEWKEWGSCSEKCALGVQKRFRPCLTDQCSSKHL 795
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,398
Number of Sequences: 27780
Number of extensions: 274762
Number of successful extensions: 1159
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -