Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j01f
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.020
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.061
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.43
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.57
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 0.99
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 0.99
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 1.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 1.7
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.3
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 5.3
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 7.0
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 7.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.0
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 7.0
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 7.0
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 7.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 24 9.3
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 24 9.3
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 24 9.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 9.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.020
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +2
Query: 98 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 277
+P + T S++TI+SS+P+T+ + + T +S + TT T ST
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560
Query: 278 INFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSAT 385
+ + S P TSS S+ ++S + CT++T
Sbjct: 561 VPYTS-TPVTSSNYTISSSTPVTSTPVTTTNCTTST 595
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.5 bits (68), Expect = 0.061
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 121 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 288
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
Query: 289 LQGSKD 306
+ K+
Sbjct: 170 SKYIKE 175
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.43
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 375 VHKLNRVFGEDKSELNWETIPDDVL 301
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 0.57
Identities = 29/96 (30%), Positives = 46/96 (47%)
Frame = +2
Query: 104 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 283
+SLT+ +S ++ASSS T+ L +SI + + S S TT + S+ N
Sbjct: 107 SSLTSSSATSSSLASSST-TSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTN 165
Query: 284 FGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 391
+ A TSS S LSS +S S S++++
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLN 201
Score = 26.2 bits (55), Expect = 2.3
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 98 IPTSLTTFWRSSFTIASSSPITTVRLKRA-SIYTRRRRAKSSQMS*TN*YETTR*TAWST 274
+PTS TF S F S P ++ + S SS + T+ T+ + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731
Query: 275 PINFGSRAPRTSSGIVSQLSSDLSS 349
P++ S P + S S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756
Score = 24.6 bits (51), Expect = 7.0
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = +2
Query: 104 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 283
T LT+ ++ T ASS+P+T+V A+ A S+ ++ N +T ++ + N
Sbjct: 357 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 410
Query: 284 FGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 391
S P TSS + LSS S+ T S ++V+
Sbjct: 411 TSSVLP-TSSVSSTPLSSANSTTATSASSTPLSSVN 445
Score = 24.6 bits (51), Expect = 7.0
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +2
Query: 104 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YET--TR*TAWSTP 277
T LT+ ++ T ASS+P+T+V A+ + ++ + T+ T + T+ P
Sbjct: 471 TPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLP 530
Query: 278 INFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 391
+ S P +S+ + S+ S+P T ++ T+ + S
Sbjct: 531 TSSVSSTPLSSANSTTATSAS-STPLTSVNSTTATSAS 567
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 0.99
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 130 QLYNSVVVADYDSAVEKSKHLYEEKKS 210
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 0.99
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 290 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 391
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 320 VSQLSSDLSSPKTRLSLCTSATV 388
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 202 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 294
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 5.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 390 ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 280
E V +H L+ F ED+ E E I DV A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 5.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 376 KRDGLALTLSNDVQGDDGRPAYGD 447
K++G+ + ND G++G AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 107 TSESAAYRDATKRHRITIAGFIFGASSPVCYPRT 6
++ S + RDA K H++T +G + C P+T
Sbjct: 209 STTSYSIRDADKHHKLTTSGVTKMNITERCKPKT 242
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 RSWVTHRTRRSKDEARYSYSMSFRGIS 86
R +V RRS D + YSY + +GI+
Sbjct: 355 RLYVPRSHRRSSDRSHYSYVVIQKGIT 381
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 7.0
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 98 IPTSLTTFWRSSFTIASSSPITTVRLKRASI-YTRRRRAKSSQMS*TN*YETTR*TAWST 274
IPTS+ + SSFT +SSS TT+ S+ YT ++ S Y + S
Sbjct: 301 IPTSVPSSV-SSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSV 359
Query: 275 PINFGSRAPRTSSGIVSQLSSDLS 346
P + S SS + +S+ S
Sbjct: 360 PSSVSSFTSSNSSYTTTLTASNTS 383
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 RSWVTHRTRRSKDEARYSYSMSFRGIS 86
R +V RRS D + YSY + +GI+
Sbjct: 355 RLYVPRSHRRSSDRSHYSYVVIQKGIT 381
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 165 VVIGDDDAIVKLLLQNVVRDVGICSIQ 85
VVIGD+ I K +L N V+ CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 7.0
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 121 LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 261
LE L + +VA S++EKSK LY+ K ++ +VV R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 3 VRSWVTHRTRRSKDEARYSYSMSFRGISVCC 95
V SW T+++R++ A Y M IS+ C
Sbjct: 252 VASWETYQSRKAALTANDVYKMQPPNISLAC 282
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 24 RTRRSKDEARYSYSMSFRGIS 86
RTR + EAR SY RG++
Sbjct: 491 RTRNLRKEARLSYYTKLRGVN 511
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.2 bits (50), Expect = 9.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 429 AIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALE 289
A++A +I QS+ A+V LN+ F KSE+ + + G L+
Sbjct: 800 ALIAAQLICIFQSK--AIVTSLNKSFMSPKSEVRIKVFTTLIFGQLD 844
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 100 SDVPNDILEEQLYNSVVVADYDSAVEKSKHLY 195
S +P I E Q + + EKSKHLY
Sbjct: 129 SHIPGMITENQTNDDAKEVNGSDVDEKSKHLY 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,520
Number of Sequences: 5004
Number of extensions: 30834
Number of successful extensions: 139
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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