Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j01f
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 29 1.3
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 29 1.3
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 29 2.3
12_01_0378 - 2946916-2947590 28 3.0
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 5.2
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011... 27 5.2
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 27 6.9
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 27 9.1
10_08_0589 + 19022233-19022457,19022578-19022709,19023129-190232... 27 9.1
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 115 DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 288
DIL E LY S ++DY D ++L + + + N++ + ++NN+ + +W
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNRYFIV--IDDIW 294
Query: 289 LQGSKDIVRDCFP 327
+ + +++ FP
Sbjct: 295 SKSAWQVIQCAFP 307
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 351 GEDKSELNWETIPDDVLGALEPKLIGVLHAVHLVVSYQFVH 229
GED++ LNWET LGA G+ H +H + +FVH
Sbjct: 462 GEDRTPLNWETRVRIALGAAR----GIAH-IHTENNGKFVH 497
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 11 LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 169
LG +T+Q + + +W + +L +P ++ W + IASS +T +
Sbjct: 1059 LGGFASTTIQLLGIVAVMSKVTWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111
>12_01_0378 - 2946916-2947590
Length = 224
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 25 GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 165
G+ ++P +++L ASL AA++ VP + ++ +VV D+D
Sbjct: 87 GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 27.5 bits (58), Expect = 5.2
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 122 WRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINF----G 289
W + FT+ +S P T + A T R ++ T Y + T P+N G
Sbjct: 41 WITRFTLQASPPATAA-IPAAVAATTRAGVPAAPPHPT--YSISCSTPPRPPLNLSGGGG 97
Query: 290 SRAPRTSSGIVSQLSSDLSSPKTRLSLCT-SATVS 391
+R P+TS + LSS SS ++ T SA+VS
Sbjct: 98 ARTPQTSQTLALALSSSSSSCRSSPDPATASASVS 132
>03_06_0460 -
34098115-34098622,34098981-34099355,34100939-34101156,
34101235-34101297
Length = 387
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 113 LGTSESAAYRDATKRHRITIAGFIFGAS 30
+G +++A+Y +T R + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 226 VVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLS 405
+V K+ N EY Q + ++ CF E +++ ++ + KR+G
Sbjct: 490 IVGKVPSTVSFNETEYYTAAPRQKEEGVLYCCFGTELEVLYYYESVASLAKRNGSPCQQG 549
Query: 406 NDVQG 420
+D QG
Sbjct: 550 DDYQG 554
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 163 DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW--LQGSKDIVRDC 321
D +++ K Y E + + N + ++ N + AY+LW G K +R+C
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355
>10_08_0589 +
19022233-19022457,19022578-19022709,19023129-19023227,
19023384-19023431,19023926-19023976,19024205-19024273,
19024337-19024419,19024643-19024766,19024843-19024902,
19024983-19025225,19025426-19025509,19025581-19025728,
19025909-19025986,19025987-19026114,19026204-19026251,
19026922-19027052,19027708-19027817,19028365-19028468,
19028614-19028684,19029091-19029389,19029507-19029682
Length = 836
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 52 AIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVV 231
AIV L LFV SL D+D+ N L + + +S + Y V+ + + +++ N
Sbjct: 140 AIVSLMLFVESLQILDADI-NKSLVKSIQDSPELRRYREQVQVLESRLYQLMDKLVRNAD 198
Query: 232 NK 237
N+
Sbjct: 199 NE 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,110
Number of Sequences: 37544
Number of extensions: 208898
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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