Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12j01f
         (447 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four ...    31   2.4  
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.              30   4.1  
AK000943-1|BAA91437.1|  530|Homo sapiens protein ( Homo sapiens ...    29   7.2  

>AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four and
           a half LIM domain protein 2 protein.
          Length = 151

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 266 WSTPINFGSRAPRTSSGIVSQLSSDLSSPKT-RLSLC 373
           WST    G R   +++   SQL   +SSPKT R+S+C
Sbjct: 57  WSTRAAAGMRPASSATAASSQLEPRVSSPKTIRISVC 93


>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
          Length = 2448

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 24/98 (24%), Positives = 42/98 (42%)
 Frame = +2

Query: 101  PTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI 280
            PT  T+ W+ S T    +  TT   + ++ Y       S+  + T    TT  T  S P 
Sbjct: 2240 PTQSTSSWQKSRTTTLVTTSTTSTPQTSTTYAHTTSTTSAPTARTTSAPTTSTT--SVPT 2297

Query: 281  NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 394
                  P+T+   V   S+  ++  + +S  T++T S+
Sbjct: 2298 TSTISGPKTTPSPVPTTSTTSAATTSTISAPTTSTTSV 2335


>AK000943-1|BAA91437.1|  530|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10081 fis, clone HEMBA1002018. ).
          Length = 530

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 296 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 391
           +P  S G+ S  SS  SSPKT+++  TSA  S
Sbjct: 436 SPSGSEGLSSVSSSPTSSPKTKVTTVTSAQKS 467


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,138,359
Number of Sequences: 237096
Number of extensions: 1088825
Number of successful extensions: 2907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2905
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)