Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12j01f
(447 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 30 0.67
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 30 0.67
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 0.88
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 0.88
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 28 3.6
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 3.6
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 3.6
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 28 3.6
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 28 3.6
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 27 4.7
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 27 4.7
U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical... 27 6.2
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 27 6.2
AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical... 27 6.2
AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical... 27 6.2
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 27 6.2
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 30.3 bits (65), Expect = 0.67
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 157 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 267
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 30.3 bits (65), Expect = 0.67
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 157 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 267
D D + EK + +KK IT++VN +IRN C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 0.88
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 214 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 390
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 29.9 bits (64), Expect = 0.88
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 214 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 390
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 284 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 391
FG APRT SG + Q S++L S+PKT A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 296 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 391
A + SSG+VSQ+SS SS + R +L ++ S
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.9 bits (59), Expect = 3.6
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 37 PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 204
P +K +V LC+ +LY + S + + EQLY +SV A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 205 KSEVITNVVNKLIRNNKMNCMEYAY 279
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.9 bits (59), Expect = 3.6
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 37 PKMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 204
P +K +V LC+ +LY + S + + EQLY +SV A + ++ + + EE
Sbjct: 922 PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981
Query: 205 KSEVITNVVNKLIRNNKMNCMEYAY 279
+ E N++N + C+E AY
Sbjct: 982 EPETYHNILN--VMPEGQACLEKAY 1004
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 154 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCFP 327
A Y S +K + EEK E I N + R K + ++ L+ S+D+ RDC
Sbjct: 29 ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87
Query: 328 VEFRLIFA 351
++ FA
Sbjct: 88 IDMDAYFA 95
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 27.9 bits (59), Expect = 3.6
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = +2
Query: 2 SSFLGNTQDSTLQ-R*SPL*LFYVFSWH--LCMLQIPTSLTTFWRSSFTIASSSPITTVR 172
++F N + TL+ P + VF W+ L + S ++ F + P TT
Sbjct: 173 ATFSNNLEPDTLRLHPDPAIISRVFEWYSNATNLYVTPSQGVYYIQYFRADLNEPTTTST 232
Query: 173 LKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRTSSGIVSQLSSDLSSP 352
A T A +S + TN TT ST + +P+TSS VS +S SSP
Sbjct: 233 AYAAPSST----ASTSTPAPTNLPTTTGAPTNSTTNPPTATSPKTSSQPVSSSTSSTSSP 288
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 60 NYSGLHLWSVESCVLPKNE 4
NY+ LH W +ES + P N+
Sbjct: 60 NYNNLHYWLIESQLTPSND 78
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 27.5 bits (58), Expect = 4.7
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 131 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI-NFGSRAPRT 307
SFT+ASS P T +R+++ S + + + + S + R T + + G + ++
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS-----KRDRRKKDETDVESIGEKEKKS 339
Query: 308 SSGIVSQLSSDLSSPKTRL 364
SS V + S D+ T++
Sbjct: 340 SSRKVPKESVDVKHKSTKI 358
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
F36F2.3a protein.
Length = 1128
Score = 27.5 bits (58), Expect = 4.7
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 131 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI-NFGSRAPRT 307
SFT+ASS P T +R+++ S + + + + S + R T + + G + ++
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS-----KRDRRKKDETDVESIGEKEKKS 1104
Query: 308 SSGIVSQLSSDLSSPKTRL 364
SS V + S D+ T++
Sbjct: 1105 SSRKVPKESVDVKHKSTKI 1123
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +1
Query: 262 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 351
C+ Y Y+L + +KD+ RDCF F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 60 NYSGLHLWSVESCVLPKNE 4
NY+ LH W +ES + P N+
Sbjct: 60 NYNNLHYWLIESQLTPSND 78
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 60 NYSGLHLWSVESCVLPKNE 4
NY+ LH W +ES + P N+
Sbjct: 60 NYNNLHYWLIESQLTPSND 78
>U39744-3|AAK18884.2| 563|Caenorhabditis elegans Hypothetical
protein C03F11.3 protein.
Length = 563
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 257 ILLFRISLFTTFVMTSLFFSSYK 189
I LF +S FTT + L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228
>AL117202-30|CAO82060.1| 449|Caenorhabditis elegans Hypothetical
protein Y47D3A.17d protein.
Length = 449
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 381 ALVHKLNRVFGEDKSELNWETIPD 310
AL+H+ + E K + NWE PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 381 ALVHKLNRVFGEDKSELNWETIPD 310
AL+H+ + E K + NWE PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840
>AL117202-15|CAC42376.1| 627|Caenorhabditis elegans Hypothetical
protein Y47D3A.17b protein.
Length = 627
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 381 ALVHKLNRVFGEDKSELNWETIPD 310
AL+H+ + E K + NWE PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625
>AL117202-14|CAB57894.2| 766|Caenorhabditis elegans Hypothetical
protein Y47D3A.17a protein.
Length = 766
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 381 ALVHKLNRVFGEDKSELNWETIPD 310
AL+H+ + E K + NWE PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 64 LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 213
LC F + DV EE+L + VAD+ V++ K +E+ E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,561,723
Number of Sequences: 27780
Number of extensions: 178040
Number of successful extensions: 739
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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