Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i21f
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 112 2e-25
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 112 2e-25
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 108 3e-24
U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock prot... 45 4e-05
U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock prot... 45 4e-05
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 45 4e-05
U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock prot... 41 8e-04
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 39 0.003
Z35640-2|CAA84703.1| 159|Caenorhabditis elegans Hypothetical pr... 35 0.051
M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein ( C.ele... 31 0.48
K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock prot... 30 1.1
X01577-1|CAA25732.1| 97|Caenorhabditis elegans protein ( C. el... 29 1.9
AC006774-2|AAF60616.1| 143|Caenorhabditis elegans Heat shock pr... 29 1.9
Z77657-2|CAB01146.1| 147|Caenorhabditis elegans Hypothetical pr... 29 2.6
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 29 2.6
X01576-1|CAA25731.1| 135|Caenorhabditis elegans C-terminal frag... 28 4.5
U64837-7|AAB04841.1| 143|Caenorhabditis elegans Heat shock prot... 28 4.5
U64837-6|AAB04840.1| 143|Caenorhabditis elegans Heat shock prot... 28 4.5
K03273-2|AAA28069.1| 143|Caenorhabditis elegans heat shock prot... 28 4.5
AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and cap... 28 4.5
Z81125-8|CAB03380.1| 109|Caenorhabditis elegans Hypothetical pr... 28 5.9
U53180-6|AAA96288.1| 202|Caenorhabditis elegans Hypothetical pr... 28 5.9
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 27 7.8
U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12 transcrip... 27 7.8
AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical ... 27 7.8
AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical ... 27 7.8
AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical ... 27 7.8
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 112 bits (269), Expect = 2e-25
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 34/185 (18%)
Frame = +2
Query: 134 KRNIPIKLGDFSVIDTEFSSIRERFDAE-------MRKMEEEMSKFR------SELMNRE 274
+R I + ++SVID EF ++R+RF+ E M+++ E +R + + N+
Sbjct: 3 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEMKRLRSEFEGYRPNGGPPAAISNQP 62
Query: 275 SNNFFKXXXXXXXXXQ-------------HSDSRQLAE-PSH---WDSLNSPLIQDEGDG 403
N + + H S +A P++ D+L SPLI+DE DG
Sbjct: 63 YNAYSNTSSHHETSNRTGGFGSPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDG 122
Query: 404 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPR----EQI 571
KTL+LRFDV+ Y PEE+ VKT+DN+LLVHAKHEEK+ ++V+REYN+EF PR EQI
Sbjct: 123 KTLRLRFDVANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFREYNQEFLLPRGTNPEQI 182
Query: 572 LRPLS 586
LS
Sbjct: 183 SSTLS 187
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 541 QGVLLPKGTNPEAIKSSLSRD 603
Q LLP+GTNPE I S+LS D
Sbjct: 169 QEFLLPRGTNPEQISSTLSTD 189
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 112 bits (269), Expect = 2e-25
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 34/185 (18%)
Frame = +2
Query: 134 KRNIPIKLGDFSVIDTEFSSIRERFDAE-------MRKMEEEMSKFR------SELMNRE 274
+R I + ++SVID EF ++R+RF+ E M+++ E +R + + N+
Sbjct: 17 ERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEMKRLRSEFEGYRPNGGPPAAISNQP 76
Query: 275 SNNFFKXXXXXXXXXQ-------------HSDSRQLAE-PSH---WDSLNSPLIQDEGDG 403
N + + H S +A P++ D+L SPLI+DE DG
Sbjct: 77 YNAYSNTSSHHETSNRTGGFGSPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDG 136
Query: 404 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPR----EQI 571
KTL+LRFDV+ Y PEE+ VKT+DN+LLVHAKHEEK+ ++V+REYN+EF PR EQI
Sbjct: 137 KTLRLRFDVANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFREYNQEFLLPRGTNPEQI 196
Query: 572 LRPLS 586
LS
Sbjct: 197 SSTLS 201
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 541 QGVLLPKGTNPEAIKSSLSRD 603
Q LLP+GTNPE I S+LS D
Sbjct: 183 QEFLLPRGTNPEQISSTLSTD 203
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 108 bits (260), Expect = 3e-24
Identities = 51/79 (64%), Positives = 63/79 (79%), Gaps = 4/79 (5%)
Frame = +2
Query: 362 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYN 541
D+L SPLI+DE DGKTL+LRFDV+ Y PEE+ VKT+DN+LLVHAKHEEK+ ++V+REYN
Sbjct: 12 DNLKSPLIKDESDGKTLRLRFDVANYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFREYN 71
Query: 542 REFCCPR----EQILRPLS 586
+EF PR EQI LS
Sbjct: 72 QEFLLPRGTNPEQISSTLS 90
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 541 QGVLLPKGTNPEAIKSSLSRD 603
Q LLP+GTNPE I S+LS D
Sbjct: 72 QEFLLPRGTNPEQISSTLSTD 92
>U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock protein
protein 17,isoform a protein.
Length = 149
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 425 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDT-KSVYREYNREFCCP 559
DVSQ+ PEE+ V VDN+L++ KH EK+D V R + R++ P
Sbjct: 62 DVSQFEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFVRKYNLP 107
>U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock protein
protein 17,isoform b protein.
Length = 148
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 425 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDT-KSVYREYNREFCCP 559
DVSQ+ PEE+ V VDN+L++ KH EK+D V R + R++ P
Sbjct: 61 DVSQFEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFVRKYNLP 106
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +2
Query: 353 SHWD---SLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTK- 520
S WD N +++ + ++ DV +TP+EI VK +LL+H +HE +SD
Sbjct: 12 STWDWPLQHNDGVVKVHNTKEKFEVGLDVQFFTPKEIEVKVSGQELLIHCRHETRSDNHG 71
Query: 521 SVYREYNREFCCP 559
+V RE NR + P
Sbjct: 72 TVAREINRAYKLP 84
>U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock protein
protein 43 protein.
Length = 368
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 368 LNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREY-NR 544
+NS ++ D+ + + D Q+ PEEI VKT+D+ L++ +HE+ D + + Y R
Sbjct: 103 VNSNVVNDD---RRFAVDMDCYQFRPEEIQVKTLDDTLMIEGRHEDIRDKDNFTKMYFVR 159
Query: 545 EFCCPRE 565
++ PR+
Sbjct: 160 KYQLPRD 166
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 341 LAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDT- 517
++ PS S N L + DVS+Y + + V VDN ++V H EK DT
Sbjct: 58 ISSPSVVGSQNGNLTSIRVTNTSFHAILDVSKYDADSLKVTVVDNNIIVEGSHGEKEDTY 117
Query: 518 KSVYREYNREFCCPR 562
++ + R F P+
Sbjct: 118 GTIESTFKRRFPLPK 132
>Z35640-2|CAA84703.1| 159|Caenorhabditis elegans Hypothetical
protein F43D9.4 protein.
Length = 159
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 392 EGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPRE 565
E + ++ DV+ + PEE+ V + L + HE K++ R + R+F P++
Sbjct: 47 ENTAQKFCVKLDVAAFKPEELKVNLEGHVLTIEGHHEVKTEHGFSKRSFTRQFTLPKD 104
>M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 144
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +2
Query: 362 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYN 541
D++ ++ DE ++ DVS + PE + +K +L + E KS+ + R ++
Sbjct: 42 DNIGEQIVNDESK---FSVQLDVSHFKPENLKIKLDGRELKIEGIQETKSEHGYLKRSFS 98
Query: 542 REFCCPRE 565
+ P +
Sbjct: 99 KMILLPED 106
>K03273-3|AAA28067.1| 144|Caenorhabditis elegans heat shock protein
16-48a protein.
Length = 144
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/68 (20%), Positives = 33/68 (48%)
Frame = +2
Query: 362 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYN 541
D++ ++ DE ++ DVS + PE++ ++ +L + E+KS+ R ++
Sbjct: 42 DNIGEQIVNDESK---FSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFS 98
Query: 542 REFCCPRE 565
+ P +
Sbjct: 99 KMILLPED 106
>X01577-1|CAA25732.1| 97|Caenorhabditis elegans protein ( C.
elegans mRNA 3'-regionfor heat shock protein hsp 16-41
(exon 2).somal genes.).
Length = 97
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 398 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPRE 565
D ++ DVS + PE + +K +L + E KS+ + R +++ P +
Sbjct: 4 DESKFSVQLDVSHFKPENLKIKLDGRELKIEGIQETKSEHGYLKRSFSKMILLPED 59
>AC006774-2|AAF60616.1| 143|Caenorhabditis elegans Heat shock
protein protein 16.41 protein.
Length = 143
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +2
Query: 398 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPRE 565
D ++ DVS + PE + +K +L + E KS+ + R +++ P +
Sbjct: 50 DESKFSVQLDVSHFKPENLKIKLDGRELKIEGIQETKSEHGYLKRSFSKMILLPED 105
>Z77657-2|CAB01146.1| 147|Caenorhabditis elegans Hypothetical
protein F08H9.3 protein.
Length = 147
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 416 LRFDVSQYTPEEIVVKTVDNKLLVHAKHEE-KSDTKSVYREYNREFCCPREQILRPLS 586
+ +V PEE+ + KL + A+H+E ++D S + Y++ P + + LS
Sbjct: 53 VNLNVPDVKPEELKINLEGRKLSIKAEHQEIENDNISTTQTYSKSIVLPEDVDVTHLS 110
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +2
Query: 383 IQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKH-------EEKSDTKSVYREYN 541
I D DG K V + E + T DNK L ++ E+KSD K + +
Sbjct: 399 IFDCEDGADEKKCTPVKECVVESSIQFTCDNKCLESSRRCDGVWDCEDKSDEKGCDKCPS 458
Query: 542 REFCCPREQILRPLSLRCPG 601
R F C ++ P RC G
Sbjct: 459 RSFKCSADKKCLPFHTRCNG 478
>X01576-1|CAA25731.1| 135|Caenorhabditis elegans C-terminal
fragment of hsp 16-48 protein.
Length = 135
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 398 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPRE 565
D ++ DVS + PE++ ++ +L + E+KS+ R +++ P +
Sbjct: 42 DESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFSKMILLPED 97
>U64837-7|AAB04841.1| 143|Caenorhabditis elegans Heat shock protein
protein 16.49 protein.
Length = 143
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 398 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPRE 565
D ++ DVS + PE++ ++ +L + E+KS+ R +++ P +
Sbjct: 50 DESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFSKMILLPED 105
>U64837-6|AAB04840.1| 143|Caenorhabditis elegans Heat shock protein
protein 16.48 protein.
Length = 143
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 398 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPRE 565
D ++ DVS + PE++ ++ +L + E+KS+ R +++ P +
Sbjct: 50 DESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFSKMILLPED 105
>K03273-2|AAA28069.1| 143|Caenorhabditis elegans heat shock protein
16-48 protein.
Length = 143
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +2
Query: 398 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFCCPRE 565
D ++ DVS + PE++ ++ +L + E+KS+ R +++ P +
Sbjct: 50 DESKFSVQLDVSHFKPEDLKIELDGRELKIEGIQEKKSEHGYSKRSFSKMILLPED 105
>AC024772-2|AAF60537.2| 756|Caenorhabditis elegans Osm-9 and
capsaicin receptor-relatedprotein 4 protein.
Length = 756
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 200 ERFDAEMRKMEEEMSKFRSELMNRE 274
E F+ + +KM EE KFR EL +
Sbjct: 701 EEFECQRKKMHEERRKFREELRTNQ 725
>Z81125-8|CAB03380.1| 109|Caenorhabditis elegans Hypothetical
protein T22A3.2a protein.
Length = 109
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 371 NSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEK-SDTKSVYREYNRE 547
N +++ + ++ D + P +I VK ++++H +H+ + ++ V RE +R
Sbjct: 21 NDGVVKVTNTSEKFEVGLDAGFFGPNDIDVKVNGIEIIIHLRHDNRPTEYGIVNREVHRT 80
Query: 548 FCCPRE 565
+ P +
Sbjct: 81 YKLPED 86
>U53180-6|AAA96288.1| 202|Caenorhabditis elegans Hypothetical
protein D1014.4 protein.
Length = 202
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +3
Query: 246 NSDQNS*TEKATISSRAQLARRHLHSTVTADSLLSPVTGIA*TRRSFKTRVTARLSSFAL 425
+++ S E TIS +Q+A + L V+ PV+ +R F +SF
Sbjct: 113 SNELQSVQELRTISGESQMAEQALDYIVSKTFKKIPVSSQKMSRDIFNVCFVFSNNSFIQ 172
Query: 426 MSASILPKRSLLRLSTTNYWSMPNTRRNL 512
+ + R +L +S+ N S+P T+ L
Sbjct: 173 STRDAINYRQILVISSLNDISVPLTQDEL 201
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +3
Query: 396 VTARLSSFALMSASILPKRSLLRLSTTNYWSMPNTRRNLIRNLCTENTTGSFVAQGNKS 572
++ R S ++ ++ I+ L T+ YW P R N+ + G+FV + + S
Sbjct: 649 LSRRSSVNSVDTSEIIHHHPLFVKDTSKYWYKPTISREQAINMLRDKPPGTFVVRDSNS 707
>U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12
transcriptional activator protein.
Length = 515
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 190 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 297
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 194 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 230
>AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical
protein Y79H2A.1b protein.
Length = 466
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 190 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 297
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 145 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 181
>AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical
protein Y79H2A.1a protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 190 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 297
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 231 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 267
>AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical
protein C51G7.4 protein.
Length = 579
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 190 KHQRALRCRNEEDGRRN-EQIQIRTHEQRKQQFLQEH 297
+ Q A R R EE+ RR E Q +QR Q F Q+H
Sbjct: 258 RQQWAERSRYEEEQRRQYEAQQTYAQQQRAQAFWQQH 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,252,120
Number of Sequences: 27780
Number of extensions: 237391
Number of successful extensions: 977
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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