Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i21f
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   3.0  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   3.0  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.3  

>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +2

Query: 173 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 352
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK-----IPEGANTTSTTKIID 135

Query: 353 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDNK 478
            H  ++N     D  D  +  +R  V    P+ E ++ TV ++
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSE 178


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +2

Query: 173 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 352
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK-----IPEGANTTSTTKIID 135

Query: 353 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDNK 478
            H  ++N     D  D  +  +R  V    P+ E ++ TV ++
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSE 178


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +2

Query: 173 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQLAEP 352
           +D  + +++    A M+K+ E+M+   S +  +   N+ K          ++ S      
Sbjct: 81  LDGWYQTLQSAISAHMKKVREQMAGILSRIPEQGVVNWNK-----IPEGANTTSTTKIID 135

Query: 353 SHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPE-EIVVKTVDNK 478
            H  ++N     D  D  +  +R  V    P+ E ++ TV ++
Sbjct: 136 GHVVAINETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSE 178


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 589 KT*WPQDLFPWATKLPVVFSVHR 521
           +T W   + PW  KL  V   HR
Sbjct: 388 ETEWSSFINPWTKKLEFVVGQHR 410



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 149 IKLGDFSVIDTEFSS 193
           I+ GD+ V++TE+SS
Sbjct: 379 IQNGDYVVLETEWSS 393


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 589 KT*WPQDLFPWATKLPVVFSVHR 521
           +T W   + PW  KL  V   HR
Sbjct: 94  ETEWSSFINPWTKKLEFVVGQHR 116



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 149 IKLGDFSVIDTEFSS 193
           I+ GD+ V++TE+SS
Sbjct: 85  IQNGDYVVLETEWSS 99


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 478 FVVDSLNNDLF 446
           F+VD L NDLF
Sbjct: 96  FIVDRLRNDLF 106


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 138 LLRPLSAIFHVICRVEIVETKQTLKRSRVNTF 43
           L  PL+ I H  C   I  T+   + +R N F
Sbjct: 287 LEEPLTTIQHNNCLTRIPSTRINKQHTRGNNF 318


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 404 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHA 493
           K  K   DV    PE++ +   DNKL  +A
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNA 103


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 404 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHA 493
           K  K   DV    PE++ +   DNKL  +A
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNA 103


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 404 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHA 493
           K  K   DV    PE++ +   DNKL  +A
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLASNA 103


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 401 GKTLKLRFDVSQYTPEEIVVKTVDNKL 481
           G+TL+L+  V+ Y  EEI  +  + +L
Sbjct: 533 GETLRLKCPVAGYPIEEIKWERANREL 559


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 401 GKTLKLRFDVSQYTPEEIVVKTVDNKL 481
           G+TL+L+  V+ Y  EEI  +  + +L
Sbjct: 533 GETLRLKCPVAGYPIEEIKWERANREL 559


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 214 RNEEDGRRNEQIQIRTHEQRK 276
           +NE+  +  EQ++ R  EQR+
Sbjct: 61  KNEQQRKEMEQMREREREQRE 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,167
Number of Sequences: 438
Number of extensions: 2779
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)