Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i19r
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.020
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.14
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.44
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.0
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 1.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 3.1
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 4.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 5.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 5.4
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 7.2
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 9.5
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 9.5
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 9.5
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.5 bits (73), Expect = 0.020
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -3
Query: 209 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTV-IAP-LX 36
VTP P S S PP +T T S P +++ S T T +ST + P +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 35 PSNTTGTLSPP 3
P++T+ T +PP
Sbjct: 361 PTSTSSTSTPP 371
Score = 33.1 bits (72), Expect = 0.027
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 203 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTVIAPLXPS- 30
P T + S P P T+ TS S PP NST + +T V + SST P S
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPAST 322
Query: 29 NTTGTLSPP 3
++TGT S P
Sbjct: 323 SSTGTSSSP 331
Score = 29.1 bits (62), Expect = 0.44
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 209 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTV-IAPLXP 33
VTP P S S PP +T T S P +++ S T T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 32 SNTTGT 15
++ T
Sbjct: 415 PTSSST 420
Score = 27.9 bits (59), Expect = 1.0
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = -3
Query: 218 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSI--TRKVXVMTVSSTVI 48
L++ TP T P S S W TT T S T+ST + T + SST I
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 47 APLXPSNTTGTLS 9
+ S T + S
Sbjct: 658 STSSSSTATSSTS 670
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -3
Query: 209 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVXVMTV-SSTVIAPLX 36
+TP P S S+P P T+ + S P T ST S T + T SS++ P+
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST--SCTTSTSIPTGGSSSLSTPIT 248
Query: 35 PS 30
P+
Sbjct: 249 PT 250
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 212 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMT--VSSTVIAPL 39
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLST 389
Query: 38 XPSNTTGTLSPP 3
S TT T PP
Sbjct: 390 STSCTTSTSIPP 401
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 212 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMT--VSSTVIAPL 39
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 38 XPSNTTGTLSPP 3
S TT T PP
Sbjct: 336 STSCTTSTSIPP 347
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.14
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 100 QVLFVFGGHDLEVYSVVFQHGGK 168
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.44
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 483 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 340
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 516 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 400
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 149 TTEYTSRSCPPKTNST*SSITRKVXVMTVSSTVIAPLXPSNTTGTLSPP 3
+T TS PP T+ ++ T ++T + P NTT T +PP
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPP 111
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -3
Query: 167 LPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTVIAPLXPSNTTGTLSPP 3
+PP + T+ + PP T+ ++ + ++T P N+T T+ PP
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPP 124
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 209 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTVIAPLXPS 30
V P + + ++PP T+ T+ + PP T+ ++ T S+T + P
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 29 NTTGTLSPP 3
T T+ PP
Sbjct: 128 VNTTTVVPP 136
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 80 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 229
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 127 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 228
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 279 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 187
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -2
Query: 297 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 118
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 117 EDKQYLK 97
+ ++K
Sbjct: 202 DGFDFIK 208
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 229 VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 345
V+L+ + G + + L LL +D +++ +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 422 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 538
SL+ S FFS YSE + + + IYS S S S+
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 459 EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 364
+Y KE + EV+ + L ENGK N AY+
Sbjct: 923 KYDKEAQKEVLIIFAQYLRENGKSNEAAIAYE 954
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -2
Query: 210 GDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKL 94
G ++ +S SW F P N R+Y +Q+ +L
Sbjct: 69 GGEREGSSLTHSWTFQPGKHNQRLYSDNFQEAQRQWKRL 107
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 9.5
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = -2
Query: 336 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 172
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 171 KFTPVLENNRVYFKIMSTEDKQY 103
P+L + + F + Y
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSY 217
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 50 IAPLXPSNTTGTLSPP 3
+ PL PS+ +G LSPP
Sbjct: 146 VHPLRPSHVSGPLSPP 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,369
Number of Sequences: 5004
Number of extensions: 48214
Number of successful extensions: 213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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