Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i19r
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.59
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 1.8
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 2.4
05_03_0469 + 14439472-14440905 28 4.1
03_02_0950 + 12661008-12662312,12662403-12662576 28 4.1
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 4.1
11_06_0198 - 21158350-21159528 28 5.5
08_01_0692 + 6121443-6122266,6122812-6124798 28 5.5
04_03_1035 - 21887562-21890030 27 7.2
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 27 9.6
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 27 9.6
08_02_1198 + 25204896-25206755 27 9.6
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 27 9.6
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 303 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 199
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 235 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 321
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -2
Query: 516 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 346
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 345 KEIVK 331
+ +
Sbjct: 551 DPMTR 555
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 209 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 117
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 531 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 430
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 219 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 85
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 505 ECRHW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRQEEHH 380
+CR W R + + + E +E Y G RE RKR + HH
Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 232 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 345
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 507 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNT 382
MS V+G E A+A C EY + G + A+ R +G T
Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 203 PKTKPARKSPGSLPPCWKTTEYT-SRSCPP 117
PKTK R G+ P W + T SRS PP
Sbjct: 51 PKTKQPRGVKGTRRPSWSSWSSTASRSSPP 80
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 232 LLVDQLEGVMVPFVYELDSLLGEDHSKLDG 321
++V L GVM P + +L L+ +++SKL G
Sbjct: 8 MMVSALTGVMSPVLGKLAGLMEQEYSKLRG 37
>08_02_1198 + 25204896-25206755
Length = 619
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = -2
Query: 201 KDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGXSDDRIIYGDSTAXTFKH 25
+DK + K S + VL +YF+ Q + +G SDD IY S H
Sbjct: 267 QDKMTAKESLIWLGVLRREEIYFRSSDNVGSQITHRSSREGKSDD--IYSSSDEYDVDH 323
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 258 HALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLE 151
H L D NHN + + K TS K + +PV E
Sbjct: 31 HLLAFYDIHNHNLLDYSTEKPLTSVKTFFNNSPVRE 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,724,061
Number of Sequences: 37544
Number of extensions: 311941
Number of successful extensions: 1070
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -