Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i17r
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical pr...   195   3e-50
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    81   1e-15
AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q (u...    38   0.010
U00051-9|AAM29693.1|  503|Caenorhabditis elegans Aldehyde dehydr...    29   2.8  
U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde dehydr...    29   2.8  
AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    28   6.4  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical
           protein R07B7.5 protein.
          Length = 461

 Score =  195 bits (475), Expect = 3e-50
 Identities = 89/195 (45%), Positives = 132/195 (67%), Gaps = 2/195 (1%)
 Frame = -3

Query: 711 FFEKYFPDSIPLIGKQKLIADYFAGSASPLIAIKCRPYNVEDKALIIGDAAHAVVPFYGQ 532
           FFE+ FPD+  L+GK+ +   +      PL++IKC P++  D  +++GDAAHA+VPFYGQ
Sbjct: 267 FFEENFPDAFLLLGKEHIADTFNRVKPQPLVSIKCSPHSFFDNLVLMGDAAHAMVPFYGQ 326

Query: 531 GMNAGFEDCTILNQLFQKHHDDLAKILKEFSDTRWEDTFAISDLAMYNYIEMRDLVTRPS 352
           GMN GFEDC + ++  +++ +D+AK +K +SD R  D  +I+DLAMYNY E++DLV + S
Sbjct: 327 GMNCGFEDCLVFSETLEEYGNDIAKAVKVYSDGRVNDAHSINDLAMYNYEELKDLVNKSS 386

Query: 351 YLLRKAIDDVIFWLMPKVWIPLYNSVTFSTIPYTQCIKNRQWQDKVLNRSLLFLGTVT-- 178
           Y LRK  D ++  + PK WIPLY+ VTFS IPY++ I+ R+ QDK+L+R +    T+   
Sbjct: 387 YKLRKKFDTIMNSIFPKSWIPLYSMVTFSRIPYSEVIERRKRQDKILSRIMTTTSTLALI 446

Query: 177 SAVGAFYVYKKFVGL 133
            A    YV +  +GL
Sbjct: 447 GAAAGIYVNRGKLGL 461


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
 Frame = -3

Query: 711 FFEKYFPDSIPLIGKQKLIADYFAGSASPLIAIKCRPYNVEDKALIIGDAAHAVVPFYGQ 532
           FF+  F +   ++G+  +           +I+++C  +   DK +++GDAAHA+VPF GQ
Sbjct: 210 FFKNNFYEIFKILGEDHIRNTIARNKPQAIISVQCSQHVFFDKLVLMGDAAHAMVPFNGQ 269

Query: 531 GMNAGFEDCTILNQLF-QKHHDDLAKILKEFSDTRWEDTFAISDL 400
           G+N GFEDC +L ++  Q   D+L  ++KE+S  R  +T  I+ +
Sbjct: 270 GVNCGFEDCLVLQEIMDQYEEDELEDVIKEYSKVRTNETNIINQM 314


>AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 6 protein.
          Length = 451

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -3

Query: 594 VEDKALIIGDAAHAVVPFYGQGMNAGFEDCTILNQL 487
           +  +  +IGDAAH + P  GQG+N G+ D  IL+++
Sbjct: 338 ITTRCALIGDAAHRMHPLAGQGVNLGWSDVQILDKV 373


>U00051-9|AAM29693.1|  503|Caenorhabditis elegans Aldehyde
           dehydrogenase protein11, isoform b protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 672 LSAELNLGNIFRKTFNNLSPLSNF 743
           +S +LN GN++  T+N++SPL  F
Sbjct: 443 VSEQLNAGNVYVNTYNDVSPLVPF 466


>U00051-8|AAA91356.1|  687|Caenorhabditis elegans Aldehyde
           dehydrogenase protein11, isoform a protein.
          Length = 687

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 672 LSAELNLGNIFRKTFNNLSPLSNF 743
           +S +LN GN++  T+N++SPL  F
Sbjct: 627 VSEQLNAGNVYVNTYNDVSPLVPF 650


>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 283 VERNPNFGHQPKNDVINSFSQEIGWSCYKISHLNIIVHSQITNCKSILPSGVREFFQYF 459
           V  NPNF  +   D+ N F Q++G    ++   + +VH +I   K       RE  +YF
Sbjct: 287 VATNPNFDGKLV-DIENEFQQQLGVMIPRLLDSHALVHKEINGQKMT----CRELLEYF 340


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 283 VERNPNFGHQPKNDVINSFSQEIGWSCYKISHLNIIVHSQITNCKSILPSGVREFFQYF 459
           V  NPNF  +   D+ N F Q++G    ++   + +VH +I   K       RE  +YF
Sbjct: 287 VATNPNFDGKLV-DIENEFQQQLGVMIPRLLDSHALVHKEINGQKMT----CRELLEYF 340


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 283 VERNPNFGHQPKNDVINSFSQEIGWSCYKISHLNIIVHSQITNCKSILPSGVREFFQYF 459
           V  NPNF  +   D+ N F Q++G    ++   + +VH +I   K       RE  +YF
Sbjct: 287 VATNPNFDGKLV-DIENEFQQQLGVMIPRLLDSHALVHKEINGQKMT----CRELLEYF 340


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 495 NQLFQKHHDDLAKILKEFSDTRWEDTFAISDLAMY-NYIEMRDLVTRPSYLLRKAIDDV 322
           +++   + DDL+KILK  +  R      +SD   Y N     + + +P  + ++AI+++
Sbjct: 519 SKMVGSYMDDLSKILKALNSARDNTLKKLSDEIKYLNRFNQSEEINKPLLIGKEAIEEL 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,204,035
Number of Sequences: 27780
Number of extensions: 361403
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)