Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i17f
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical pr...   104   6e-23
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    52   2e-07
U41746-3|AAO25990.1|  429|Caenorhabditis elegans Aspartyl protea...    28   5.9  
U41746-2|AAO25989.1|  635|Caenorhabditis elegans Aspartyl protea...    28   5.9  

>Z75955-3|CAB00114.1|  461|Caenorhabditis elegans Hypothetical
           protein R07B7.5 protein.
          Length = 461

 Score =  104 bits (249), Expect = 6e-23
 Identities = 51/118 (43%), Positives = 78/118 (66%)
 Frame = +3

Query: 213 SLEALFLAKRGHRVRLYEYREDIRNTPQARGRSINLALSIRGRTALREVGLEDHMINNHG 392
           +L A F A++G  V +YE+R+DIR     +GRSINLALS RG++AL  VGL+++++ N G
Sbjct: 14  ALNACFFAQKGWDVSVYEFRKDIRTMKHVQGRSINLALSQRGKSALEAVGLKEYIV-NQG 72

Query: 393 IPMKGRNIHRIDGSTYIIPYDSRTKQCIYSVGRNYLNGLLLQESEKYENVERFFNHKL 566
           +P+  R IH  DG TY      +  + I S+ R +LN +++ ++EK  NV+ FF HK+
Sbjct: 73  VPLYARLIHNKDGKTYSRQPYGKPGEHIVSINRRHLNEVMITQAEKSPNVKFFFEHKV 130


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
 Frame = +3

Query: 303 GRSINLALSIRGRTALREVGLEDHMINNHGIPMKGRNIHRID--GSTYIIPYDSRTKQCI 476
           G+SINLAL +R  + ++ +GL++ +I + G+P++ +  H  D  G    +P        I
Sbjct: 4   GKSINLALGVRAMSTMKRIGLKEKVI-HIGVPIRDQIAHFGDTKGKLKRLPV-LNDDDFI 61

Query: 477 YSVGRNYLNGLLLQESEKYENVERFFNHKLIASNLR 584
            ++ R  L+ +L+ E+EKY NV+  FN K    +L+
Sbjct: 62  LTINRQELSQILINEAEKYNNVKFHFNCKATKFDLK 97


>U41746-3|AAO25990.1|  429|Caenorhabditis elegans Aspartyl protease
           protein 2, isoformb protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 405 GRNIHRIDGSTYIIPYDSRTKQCIYSV 485
           G  ++ ID S  IIP    +  CIY++
Sbjct: 361 GNQVYNIDSSNTIIPLGDGSNNCIYAI 387


>U41746-2|AAO25989.1|  635|Caenorhabditis elegans Aspartyl protease
           protein 2, isoforma protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 405 GRNIHRIDGSTYIIPYDSRTKQCIYSV 485
           G  ++ ID S  IIP    +  CIY++
Sbjct: 567 GNQVYNIDSSNTIIPLGDGSNNCIYAI 593


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,958
Number of Sequences: 27780
Number of extensions: 276524
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)