Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i14f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633 208 3e-54
05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577 204 4e-53
03_05_0679 + 26678131-26679204 36 0.035
01_06_1140 - 34836967-34836996,34837107-34838771 30 1.3
08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579 29 2.3
08_01_0553 - 4846808-4847029,4847131-4847748 29 3.0
01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845 26 3.5
01_06_1493 + 37753816-37755558 26 4.6
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519... 28 5.2
09_04_0650 - 19214589-19215106,19215839-19215935,19216100-192161... 27 9.2
>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
Length = 171
Score = 208 bits (508), Expect = 3e-54
Identities = 103/149 (69%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Frame = +1
Query: 76 LINGIRRCMCLKGFGSPNVILAAP-YHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPAC 252
L G+RR + G +P + A YH V+DHYENPRNVGS + D +VGTGLVGAPAC
Sbjct: 10 LAPGLRRVLG-GGAAAPVAVGGAKAYHERVVDHYENPRNVGSFENDDPSVGTGLVGAPAC 68
Query: 253 GDVMKLQIKVDEN-GKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKE 429
GDVMKLQI+VDE+ GKIVDA FKTFGCGSAIASSS+ATEWVKGK ++E + +KNT+IAK
Sbjct: 69 GDVMKLQIRVDESSGKIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVVTIKNTEIAKH 128
Query: 430 LSLPPVKLHCSMLAEDAIKAALSDYRIKQ 516
LSLPPVKLHCSMLAEDAIKAA+ DY K+
Sbjct: 129 LSLPPVKLHCSMLAEDAIKAAVKDYEAKK 157
>05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577
Length = 172
Score = 204 bits (498), Expect = 4e-53
Identities = 95/135 (70%), Positives = 114/135 (84%), Gaps = 1/135 (0%)
Frame = +1
Query: 130 VILAAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDE-NGKIVD 306
V+ YH V+DHY+NPRNVG+ DK D +VGTGLVGAPACGDVMKLQI+VDE +G+IVD
Sbjct: 35 VVRRRGYHERVVDHYDNPRNVGTFDKDDPDVGTGLVGAPACGDVMKLQIRVDEESGRIVD 94
Query: 307 AKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 486
A FKTFGCGSAIASSS+A+EWVKGK +++A +KN++IAK LSLPPVKLHCSMLAEDAIK
Sbjct: 95 ACFKTFGCGSAIASSSVASEWVKGKQMEDAASIKNSEIAKHLSLPPVKLHCSMLAEDAIK 154
Query: 487 AALSDYRIKQQTENK 531
AA+ DY K+ +K
Sbjct: 155 AAVKDYEAKKAKLDK 169
>03_05_0679 + 26678131-26679204
Length = 357
Score = 35.5 bits (78), Expect = 0.035
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 437 KDSSLAISVFFNFSASSTVFPLTHSVAREL-EAIAEPHPKVLNLASTIFPFSSTLICNFI 261
+ +S SV F+F ASS+ P + REL + + P +LA ++PF + + I
Sbjct: 86 RHASCPESVHFHFLASSSSSPEAAAAVRELRDTVRASFP---SLAFRVYPFDESRVAGLI 142
Query: 260 TSPHAGAPTRPVPTFLSFLS 201
++ GA RP+ S+L+
Sbjct: 143 STSIRGALDRPLNYARSYLA 162
>01_06_1140 - 34836967-34836996,34837107-34838771
Length = 564
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 244 PACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 405
PAC LQ+ + +G IV + G + A ++L + K +DEA ++
Sbjct: 314 PACAQTAALQVGREVHGYIVTSGLACHGALDSFACNALVDMYAKSGALDEARRI 367
>08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579
Length = 234
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 440 GKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 321
G ++ L + +TV+P H REL I + HPK
Sbjct: 7 GSNTLLKSDSILEYVLDTTVYPREHERLRELRLITQNHPK 46
>08_01_0553 - 4846808-4847029,4847131-4847748
Length = 279
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 208 KDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASS 351
K ++VGT AP+ + ++ I VD + ++AK G GS +AS+
Sbjct: 187 KAQSVGTAAGAAPSSPNAAQVTIDVDFVAEAIEAKRAVGGRGSNLASA 234
>01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845
Length = 767
Score = 26.2 bits (55), Expect(2) = 3.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 82 NGIRRCMCLKGFGSPNV 132
N + C CL+GFG NV
Sbjct: 324 NAMASCSCLRGFGEQNV 340
Score = 21.0 bits (42), Expect(2) = 3.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 211 DKNVGTGLVGAPACGDVMKLQIKVDENGKIV 303
++NVG L G G ++++ NG +V
Sbjct: 337 EQNVGEWLQGDHTSGCRRNVELQCSSNGSVV 367
>01_06_1493 + 37753816-37755558
Length = 580
Score = 25.8 bits (54), Expect(2) = 4.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 82 NGIRRCMCLKGFGSPNV 132
N + C CL+GFG NV
Sbjct: 84 NAMAPCSCLRGFGEQNV 100
Score = 21.0 bits (42), Expect(2) = 4.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 211 DKNVGTGLVGAPACGDVMKLQIKVDENGKIV 303
++NVG L G G ++++ NG +V
Sbjct: 97 EQNVGEWLQGDHTSGCRRNVELQCSSNGSVV 127
>02_04_0314 -
21950400-21950639,21951384-21951680,21951791-21951920,
21952377-21952699,21953385-21953606,21953693-21954089,
21954488-21954540
Length = 553
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 409 NTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQTEN 528
+ D+A LPP + C ++ ED A L R+ + EN
Sbjct: 282 SVDLAMLAGLPPAAVLCEIVDEDGSMARLPKLRVFAEREN 321
>09_04_0650 -
19214589-19215106,19215839-19215935,19216100-19216189,
19216323-19216436,19217126-19217201,19217329-19217618
Length = 394
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 29 RLSSEFVFLKY--IKWLF*STEFVDVCVLKALEVLM*FLRHLIMQTSLTITRI 181
RL SEF+ L+Y I +L + FVD+C A+ L+ +R L+ Q L + +
Sbjct: 118 RLLSEFLNLRYSQISFLLARSFFVDLCT--AILALLARVRALVQQMLLDVVSV 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,773
Number of Sequences: 37544
Number of extensions: 299403
Number of successful extensions: 765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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