Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i10r
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine re...    30   1.5  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL110478-7|CAB54341.2|  343|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF016449-3|AAG23997.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein15 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
 Frame = -3

Query: 528 TLIGISDLSLTRLHIRVQNLNQYNDKKKTF------------FI*IFSGSLFNSLNPINT 385
           T +G    SL    IRV +LN  N  KK+F            F  +F G+ F      NT
Sbjct: 133 TWMGCCASSLVLAVIRVSDLNSTNTFKKSFDGGKINYVLLVCFAYVFYGTFFTKPVIYNT 192

Query: 384 L*ITKRVWALI--SSFNF-NKVMLSNNASMVRVGLSNDN*HNFYKHLQSTIYVYQSSTTT 214
             +T      I  SS N+ N + +SNN+ +  + +S      FY +L S IY+  +ST  
Sbjct: 193 GYMTWVFDPNIGKSSSNYVNYIHISNNSMVAILSIS------FYGYLAS-IYLRGNSTAN 245

Query: 213 SSDYPNPSGIPLSTSSCAE-LSHSFYVMFYGSVHTFVMAQAYILISN 76
           +S   +   I +   S      HS   + Y  +  FV     ILI +
Sbjct: 246 ASKKLSNMQIKILLQSFLFCFFHSVSALLYAYMQLFVGTSTLILIGH 292


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -3

Query: 579  ITNMQLSHKSFLSDLSFTLIGISDLSLTRLHIRVQNLNQYNDKKK 445
            I+  +L H  +   ++    G+++ SLT LH+R ++L +Y  KK+
Sbjct: 2192 ISPAKLEHAGYYKMIAENKRGVTE-SLTVLHVRPRSLQKYQQKKQ 2235


>AL110478-7|CAB54341.2|  343|Caenorhabditis elegans Hypothetical
           protein Y26D4A.4 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 186 IPLSTSSCA----ELSHSFYVMFYGSVHTFVMAQAYI 88
           IPLS  SC+    +L H+ Y M+Y  V TF M + YI
Sbjct: 76  IPLSKRSCSLTTEQLLHNQYYMYYPYVFTF-MKRIYI 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,834,123
Number of Sequences: 27780
Number of extensions: 325057
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)