Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i10r
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    27   0.24 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.9  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   5.2  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   5.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.2  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.0  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 638 N*YYFKIVKYCFM--NMTRLGPLQTCN*VINHFYQTSRSHL*AYPISRSHVYTFGY 477
           N  ++++    FM  N   +G L+     ++HF ++  + +   PI+RS +  FGY
Sbjct: 27  NAIFYQVYPRSFMDSNSDGIGDLKGIKDKLSHFIESGITAIWLSPINRSPMVDFGY 82


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 207 DYPNPSGIPLSTSSCAELSHSFYVMFYGSVH 115
           D  + SGIP S  S A  S   Y  F  S H
Sbjct: 24  DNNDSSGIPHSAESSASNSPDHYERFSPSTH 54


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 110


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 343


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 327 MLSNNASMVRVGLSNDN*HNFYKHLQSTIY 238
           ++SNN S+      N+N +N+ KH  + +Y
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKLY 343


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 258 HLQSTIYVYQSST 220
           H+Q  +YVY+ ST
Sbjct: 277 HVQRLLYVYEDST 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,453
Number of Sequences: 438
Number of extensions: 4348
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)